PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC519_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 796aa    MW: 90295.6 Da    PI: 9.999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC519_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.6e-192098995
               HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                 ++s+ l +p +f+++h +g++  +kt++l++ +s r+W+vk+  ++++    lt+GWkeF+ka++L++gD+v+F+++g++ f  +v+
  RrC519_p6 20 TDFESH-LKIPVTFFSKHiEGNH-VGKTVKLRSdSSDRTWKVKM--EGNR----LTEGWKEFAKAHNLRVGDVVIFSHEGDMLF--HVT 98
               556676.9**********86665.457*****96777*******..9998....***********************9998887..666 PP
2B355.41.1e-17136229298
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f++ +++++l++g + +p +fa+++g++k + + + l++++g++We +l  + +sg++++ ++Wk+F+ a +L++gD++ +kl + +++++v+++++
  RrC519_p6 136 FSQSVTASNLSRGAVGVPLDFASQNGLNKGR-RVIALRNQEGKTWESEL-KTTSSGQVFICRNWKSFCTASKLEVGDSFQLKLLQ-NKERPVFQLCS 229
                6788999*********************866.69***************.477777899999********************999.56669999985 PP
3B3543.1e-17252347199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f+k++ ++++l++g   lp +f+++++++   + +++l d++  +W++kl+ + +s  ++ +kGWk+F+ an++ +g++++++l++ +++ +v+k+++k
  RrC519_p6 252 FVKITPTASSLENGKQHLPVHFTRANKLNR--PGKIVLVDKDKVEWSMKLKADTRSMYIIGGKGWKSFCAANEVLAGESLTLELIR-RGRIPVLKFCSK 347
                88999999*******************995..558***************877777777778***********************9.555589999986 PP
4B351.42e-16365462199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f+k++t++++l+ gr  lp +f++ +++k   + +++l d+++ +W++kl+ + +sg+  ++ +kGWk+F+ an++ +g+ ++++l++r ++ +++k+++
  RrC519_p6 365 FVKITTTASSLEIGRQHLPVHFTRGNKLKR--PGKIVLVDKDNVEWSMKLNEDIRSGTmyIMGGKGWKSFCAANEVVVGEPLTLELIRR-GRIPFLKFCS 461
                89************************9995..558***************88777766545556**********************995.5558888887 PP

                S CS
         B3  99 k 99 
                k
  RrC519_p6 462 K 462
                6 PP
5B358.21.5e-18523601995
                HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   9 dvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                + ++s+ l +p +f+++h +g++ e+ t++l++ +s r+W+vk+  +++    ++t+GW eF+ka++L++gDfv+F+++g++ f  +v+
  RrC519_p6 523 SGFQSH-LKIPLTFFSKHiEGNH-EGNTVKLRSdSSDRTWKVKM--EGR----MITEGWTEFAKAHNLRVGDFVIFRHEGDMLF--HVT 601
                566666.9**********86665.556****996777*******..444....69**********************9998877..665 PP
6B3482.3e-15665763199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f+k++ ++++l++g   lp +f++++++k   + +++l d++  +W +kl+ + +sg+  ++ +kGWk+F+ an++ +g++++++l+ r ++ +++k+++
  RrC519_p6 665 FVKITPTASSLETGKQNLPLHFTRANQLKR--PGKIILVDKDKIEWPMKLKEDIRSGTmsIIDGKGWKRFCAANEVVVGESLTLELMTRPGRLPLLKFCS 762
                8899999999*****************995..558***************88666665447778***********************9988889999998 PP

                S CS
         B3  99 k 99 
                k
  RrC519_p6 763 K 763
                6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-247105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-229109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.36611103IPR003340B3 DNA binding domain
CDDcd100178.49E-1812100No hitNo description
SMARTSM010196.2E-2514103IPR003340B3 DNA binding domain
PfamPF023625.4E-132294IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-17128228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-17131228IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-13135229No hitNo description
PROSITE profilePS5086312.379135231IPR003340B3 DNA binding domain
PfamPF023622.4E-17136229IPR003340B3 DNA binding domain
SMARTSM010195.1E-20136231IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-18246347IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-17247346IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-14250346No hitNo description
PfamPF023621.6E-16252347IPR003340B3 DNA binding domain
SMARTSM010193.8E-27252348IPR003340B3 DNA binding domain
PROSITE profilePS5086313.874252347IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-16361466IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-15361462IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-15363461No hitNo description
PfamPF023621.2E-15365462IPR003340B3 DNA binding domain
PROSITE profilePS5086313.437365462IPR003340B3 DNA binding domain
SMARTSM010192.5E-26365463IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-23509602IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-19510601IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.619514606IPR003340B3 DNA binding domain
CDDcd100179.00E-18515604No hitNo description
SMARTSM010194.2E-21517606IPR003340B3 DNA binding domain
PfamPF023621.5E-13525598IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-14661763IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-14662763IPR015300DNA-binding pseudobarrel domain
CDDcd100174.24E-14664761No hitNo description
PfamPF023623.5E-14665763IPR003340B3 DNA binding domain
SMARTSM010191.5E-21665764IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281665763IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MENASLFSPA NPHFFQPLLT DFESHLKIPV TFFSKHIEGN HVGKTVKLRS DSSDRTWKVK  60
MEGNRLTEGW KEFAKAHNLR VGDVVIFSHE GDMLFHVTPF GTSCCEIQYV HSACHYKYKE  120
ESDVIGEESS SKLTCFSQSV TASNLSRGAV GVPLDFASQN GLNKGRRVIA LRNQEGKTWE  180
SELKTTSSGQ VFICRNWKSF CTASKLEVGD SFQLKLLQNK ERPVFQLCSC LKVRPKKETL  240
SEEGDKTENP RFVKITPTAS SLENGKQHLP VHFTRANKLN RPGKIVLVDK DKVEWSMKLK  300
ADTRSMYIIG GKGWKSFCAA NEVLAGESLT LELIRRGRIP VLKFCSKVKK ETLPEEDNLG  360
ETPRFVKITT TASSLEIGRQ HLPVHFTRGN KLKRPGKIVL VDKDNVEWSM KLNEDIRSGT  420
MYIMGGKGWK SFCAANEVVV GEPLTLELIR RGRIPFLKFC SKMEQPPFKT KAGGRKRTRV  480
QRLSQESRSK HDVSNQEAKW WTMENNDASF SPANPHFFQR LLSGFQSHLK IPLTFFSKHI  540
EGNHEGNTVK LRSDSSDRTW KVKMEGRMIT EGWTEFAKAH NLRVGDFVIF RHEGDMLFHV  600
TGCCEIQYVQ SVSNYNNKEE SDEIGEESSS KLTCFSQSVT ASNLSKGAVL CSCSKETLSE  660
EKLRFVKITP TASSLETGKQ NLPLHFTRAN QLKRPGKIIL VDKDKIEWPM KLKEDIRSGT  720
MSIIDGKGWK RFCAANEVVV GESLTLELMT RPGRLPLLKF CSKMDQPPFK TGRKRVRVQR  780
LRQESRLEHD VSNQEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892173e-88AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444162.10.0PREDICTED: B3 domain-containing protein REM8-like
SwissprotQ8H2D11e-135REM8_ARATH; B3 domain-containing protein REM8
TrEMBLA0A3P6F7030.0A0A3P6F703_BRAOL; Uncharacterized protein
STRINGBo1g011080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-137B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]