PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC519_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 303aa    MW: 34325.5 Da    PI: 8.6845
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC519_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.4e-183821799
               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
               +lp  fa+++g+ +  s++++l++e grsW  +l  +  sgr+v+ +GW +F+ an+ ++gD+ +Fkl + + +++v++++++
  RrC519_p4  3 SLPSAFAKRNGLYEV-SQKIVLMNEGGRSWPSEL-KKLESGRIVIVRGWTSFCIANKFQVGDSWTFKLLR-NAETPVFQLCSR 82
               79********99865.56****************.4667788*************************998.67779***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.692183IPR003340B3 DNA binding domain
SMARTSM010199.4E-15183IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-17281IPR015300DNA-binding pseudobarrel domain
PfamPF023627.3E-17382IPR003340B3 DNA binding domain
CDDcd100171.43E-17381No hitNo description
SuperFamilySSF1019367.46E-17381IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-7106188IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-5108189IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-4108188IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MQSLPSAFAK RNGLYEVSQK IVLMNEGGRS WPSELKKLES GRIVIVRGWT SFCIANKFQV  60
GDSWTFKLLR NAETPVFQLC SRAKTERKNK ETLSKEANIA ERTDENKFVK LTPTLNSLER  120
GKQHLPLSFT SVNDLIKPEK VILVDKNGDE WVMDLKSFCA VNEVGAEESL TLELILGAAS  180
PVLKFCSKME QSPLEPAEAR AHKRARVQTC IQEIRPKLEI REETAEEGEP SHRTRASDKT  240
ITNRGNLRET LPSSIPNQLM NKVKHSVLCT LTSIRLFREE LKTMEQKLED SLKDIDNLVL  300
LCS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467816.10.0PREDICTED: B3 domain-containing protein REM8-like
SwissprotQ8H2D12e-93REM8_ARATH; B3 domain-containing protein REM8
TrEMBLD7MB416e-98D7MB41_ARALL; Uncharacterized protein
STRINGscaffold_701042.11e-98(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.19e-96B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]