PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC518_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YC | ||||||||
Protein Properties | Length: 183aa MW: 20503 Da PI: 9.0927 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44.5 | 3.4e-14 | 83 | 165 | 17 | 99 |
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 k ++P+ ri++i+++d+ +i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++ + ++fl d vp++ RrC518_p2 83 KMIRFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATELFIERFSEEAYESSVQDKKKFIHYKHLSSVVSNDERYEFLADCVPEK 165 45689***************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.65E-19 | 85 | 164 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.3E-22 | 86 | 149 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.7E-24 | 87 | 164 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MVSSKKPNQE KKPSSDGVVV NKAGARNSRS SSGSNSKKKT PKLQAIAKNE PEVHEISESS 60 CSDSDERRKK SNGGGGGVED ANKMIRFPMN RIRRIMRSDN SAPQIMQDAV FLVNKATELF 120 IERFSEEAYE SSVQDKKKFI HYKHLSSVVS NDERYEFLAD CVPEKLKAEV ALEEWERSMT 180 DAG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229011 | 8e-95 | AK229011.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-31-C07. | |||
GenBank | AK229266 | 8e-95 | AK229266.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-54-O22. | |||
GenBank | AY086815 | 8e-95 | AY086815.1 Arabidopsis thaliana clone 28026 mRNA, complete sequence. | |||
GenBank | BT025266 | 8e-95 | BT025266.1 Arabidopsis thaliana At1g07980 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489427.1 | 9e-96 | PREDICTED: chromatin accessibility complex protein 1-like | ||||
TrEMBL | A0A3N6R8A9 | 4e-93 | A0A3N6R8A9_BRACR; Uncharacterized protein | ||||
STRING | Bo8g112740.1 | 1e-92 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 3e-68 | nuclear factor Y, subunit C10 |