PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5177_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 317aa MW: 35483.4 Da PI: 6.8903

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5177_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100.4	3.2e-31	44	151	2	129
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskks 100 g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a +i l +++ ++ + +ks RrC5177_p3 44 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSISGLDPIDTNFD----------------------QTLSLSKS 120 689**********************************************************99933333......................12233444 PP TCP 101 qksaasalnlak.esrakararare.rtrek 129 ++s++s l+l++ esr k+r+r + r++++ RrC5177_p3 121 STSDSSLLSLSRtESRGKERERTSKeRDNKD 151 4444445555555555555555333233333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-27	45	151	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.323	46	104	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MEDDDDIETQ QQTSRKLQRL SSDKTEMRDW SDPSSRIIRV SRASGGKDRH SKVLTSKGLR 60 DRRIRLSVAT AIQFYDLQDR LGFDQPSKAV EWLINAASDS ISGLDPIDTN FDQTLSLSKS 120 STSDSSLLSL SRTESRGKER ERTSKERDNK DLQSSFTQLL TSGFDEPNRN WTGGGSSDCF 180 NPVQLMPNSN SLNHRQEPSL NHHHHSQNQY SFVPNYNFGI SSSDSPGATG CYSSRGTLQS 240 NSQSLFLNNN NNNNINQRSL SSSSSSSSPM DSQSISFFMA PPLNNHSPQL PEAFDGRLYL 300 YYGEGNRSSD DKGKERR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-19	51	104	1	54	Putative transcription factor PCF6
5zkt_B	2e-19	51	104	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:18818695, ECO:0000269\|PubMed:25378179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018451672.1	0.0	PREDICTED: transcription factor TCP24-like
Swissprot	Q9C758	1e-128	TCP24_ARATH; Transcription factor TCP24
TrEMBL	A0A0D3BJ19	1e-176	A0A0D3BJ19_BRAOL; Uncharacterized protein
STRING	Bo3g147760.1	1e-177	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13840	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	1e-106	TCP family protein

Publications ? help Back to Top
Wang H,Mao Y,Yang J,He Y TCP24 modulates secondary cell wall thickening and anther endothecium development. Front Plant Sci, 2015. 6: p. 436 [PMID:26157444] Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161]