PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5163_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 283aa    MW: 30985.9 Da    PI: 4.6722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5163_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-1891140255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr ++ +g+Wv+eIr+p++   + r++lg++ ta++Aa+a++ a+++++g
  RrC5163_p2  91 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTADMAARAHDVAALAIKG 140
                 69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-3791154IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2191148IPR016177DNA-binding domain
PROSITE profilePS5103222.91991148IPR001471AP2/ERF domain
PfamPF008474.0E-1291140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-3191149IPR001471AP2/ERF domain
CDDcd000189.50E-3292150No hitNo description
PRINTSPR003676.1E-1092103IPR001471AP2/ERF domain
PRINTSPR003676.1E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
METHLNIDKS ASQVTLTTSA IFTVSSSSSS SSSTASFSSP TTSSSSSSKF LNFSEDTNSK  60
RKASRRSLPV QEDDDNVVKR RKTSGGDEHP TYRGVRMRSW GKWVSEIREP RKKSRIWLGT  120
YPTADMAARA HDVAALAIKG TTAYLNFPEL SGELPRPVTN SPKDIQAAAT AAAVNWQASD  180
DEAEPSREAM AQSMSGSVVF SSDNTTQESL EASCASTTSF ADKDSEEEKL FDLPDLFSDE  240
MMIRDDGFCF YSSTWQLCGT DAGFRVDEPC FFFSDLNHTT PNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1886149973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15981KRKASRRSLPVQEDDDNVVKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893991e-117AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480426.11e-180PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ71e-113ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A397ZQZ61e-143A0A397ZQZ6_BRACM; Uncharacterized protein
TrEMBLM4FGV51e-143M4FGV5_BRARP; Uncharacterized protein
STRINGBra040333.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-94ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]