PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC5154_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 27875.5 Da PI: 8.3776 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEde+lv +k+ G g+W++ +++ g+ R++k+c++rw +yl RrC5154_p3 32 RGPWTLEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 79 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 44 | 5.1e-14 | 90 | 130 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++ G++ W++Ia +++ gRt++++k++w+++l RrC5154_p3 90 PDEEDLILRLHRLIGNK-WSLIAGRIP-GRTDNEIKNYWNTHL 130 79***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 23 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.083 | 27 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.35E-29 | 28 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-13 | 31 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-15 | 32 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.79E-12 | 34 | 79 | No hit | No description |
PROSITE profile | PS51294 | 22.648 | 80 | 134 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 82 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-13 | 90 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.71E-11 | 90 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MLKTVDMTSS SGNRSVARKI TTPCCTKMGM KRGPWTLEED EILVSFIKKE GEGRWRSLPK 60 RAGLLRCGKS CRLRWMNYLR PSVKRGGIAP DEEDLILRLH RLIGNKWSLI AGRIPGRTDN 120 EIKNYWNTHL RKKLLSQGID PQTHKPLDAS NTHKPGEEVP GGQNLLEPNS SSHTDDSTVS 180 SGNGAGKISN SVFGDEDFGF CYDDKFSSFL NSVINDDPFD SNIPVLSQPL QTCDFIVGTS 240 SSLGHDQIPK D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 32 | 134 | 7 | 108 | B-MYB |
1h8a_C | 3e-25 | 30 | 134 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490075.1 | 0.0 | PREDICTED: transcription repressor MYB5 | ||||
Swissprot | Q38850 | 1e-132 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | M4EF61 | 1e-169 | M4EF61_BRARP; Uncharacterized protein | ||||
STRING | Bra027423.1-P | 1e-170 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-125 | myb domain protein 5 |
Publications ? help Back to Top | |||
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