PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC5150_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 59aa MW: 6456.07 Da PI: 4.4798 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 31.9 | 3.2e-10 | 1 | 27 | 71 | 97 |
NF-YB 71 latlGfedyveplkvylkkyrelegek 97 ++tlGfedyveplkvy +++re+ege+ RrC5150_p1 1 MTTLGFEDYVEPLKVYKQRFREIEGER 27 89***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-6 | 1 | 34 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 59 aa Download sequence Send to blast |
MTTLGFEDYV EPLKVYKQRF REIEGERTGL GRPQTCGEGG EHQRDAVGGD GDGFYGGGM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183495 | 8e-49 | AC183495.1 Brassica oleracea Contig A, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282223.1 | 2e-23 | nuclear transcription factor Y subunit B-2 | ||||
Swissprot | Q9FGJ3 | 1e-23 | NFYB2_ARATH; Nuclear transcription factor Y subunit B-2 | ||||
TrEMBL | A0A0D3D9X0 | 3e-25 | A0A0D3D9X0_BRAOL; Uncharacterized protein | ||||
STRING | Cagra.15822s0014.1.p | 5e-26 | (Capsella grandiflora) | ||||
STRING | Bo7g077790.1 | 4e-26 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47640.1 | 4e-26 | nuclear factor Y, subunit B2 |
Publications ? help Back to Top | |||
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