PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC5129_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 461aa MW: 50124.4 Da PI: 6.6791 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.3 | 8.4e-06 | 352 | 390 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +A+eYIk L RrC5129_p2 352 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 390 5778999***********98.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.735 | 341 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0075 | 347 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-11 | 351 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.14E-6 | 351 | 395 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-9 | 355 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSNESGGSAV FHDKLHHEDH HSLATEHHLQ 60 MIGLGLSSQS PVDQWNQSLL RGDSKAETSF GVMLQENLNL DANSKANANT TSSTTSYQLQ 120 ESDSSHNQAL WRDPHINNND FKPQLNMTSS NRGFFSDHHQ FSPHGSSSTD SSTVTCQGFS 180 IDNSTNTMYG TSTTPNSSSA MFHQHQGAGY SLPGSSDQQP SRNHQQSNLG YSQFGSSTGN 240 YEQIATALPS TWFLRSSPPK PHSPLRFSNN ATFWNPAATV GNLGPTQHDA SSNFFPALQP 300 PQIHQPSFDE QTKSISEVRD SSSGEVKRGG GDQPAAKKAK SEAASPSPAF KVRKEKMGDR 360 IAALQQLVSP FGKTDAASVL SEAIEYIKFL HQQVSALSNP YMKSGASLHH QQSDHPKEPD 420 VSEEPDLRSR GLCLVPVSST FPVTHDTAVD FWTPTFGGTF R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118054 | 0.0 | AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14. | |||
GenBank | BT008580 | 0.0 | BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486840.1 | 0.0 | PREDICTED: transcription factor bHLH123 isoform X1 | ||||
Swissprot | Q8GXT3 | 0.0 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A3P5Z7X7 | 0.0 | A0A3P5Z7X7_BRACM; Uncharacterized protein | ||||
STRING | Bra035761.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4024 | 25 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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