PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5053_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 279aa    MW: 32245.2 Da    PI: 8.3554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5053_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.71.4e-50171412128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                  pGfrFhPtdeel+ +yL++kve+k+++l e ik+vdiyk++PwdLp+  + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+v+s +   +
  RrC5053_p2  17 LPGFRFHPTDEELLEYYLRRKVENKPIKL-ELIKQVDIYKYDPWDLPRVSNVGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPVYS-NLDCI 113
                 69***************************.99***************8778899***************************************.9999* PP

         NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                 glkk+Lv+y g+a kg+ktdW+mhe+rl
  RrC5053_p2 114 GLKKSLVYYLGSAGKGTKTDWMMHEFRL 141
                 **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.98516165IPR003441NAC domain
SuperFamilySSF1019411.7E-5616164IPR003441NAC domain
PfamPF023651.2E-2518141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSGEGNKGHQ EEDETTLPGF RFHPTDEELL EYYLRRKVEN KPIKLELIKQ VDIYKYDPWD  60
LPRVSNVGEK EWYFFCMRGR KYRNSVRPNR VTGSGFWKAT GIDKPVYSNL DCIGLKKSLV  120
YYLGSAGKGT KTDWMMHEFR LPSTTKTDLS VQQAEVWTLC RIFKRVTHQR NPNIVQSNRK  180
PVITLADSCS KTSSLDSDHT SHCIKDSLSH KPHEPQLQLQ PQTQNPYWNQ LTRFGFNQPT  240
YTCHDNSFLS FGNLDGGDFI GDSASWDELR SVIDGNTKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5381655165NO APICAL MERISTEM PROTEIN
1ut4_B2e-5381655165NO APICAL MERISTEM PROTEIN
1ut7_A2e-5381655165NO APICAL MERISTEM PROTEIN
1ut7_B2e-5381655165NO APICAL MERISTEM PROTEIN
3swm_A3e-5381658168NAC domain-containing protein 19
3swm_B3e-5381658168NAC domain-containing protein 19
3swm_C3e-5381658168NAC domain-containing protein 19
3swm_D3e-5381658168NAC domain-containing protein 19
3swp_A3e-5381658168NAC domain-containing protein 19
3swp_B3e-5381658168NAC domain-containing protein 19
3swp_C3e-5381658168NAC domain-containing protein 19
3swp_D3e-5381658168NAC domain-containing protein 19
4dul_A2e-5381655165NAC domain-containing protein 19
4dul_B2e-5381655165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756690.0KM975669.1 Brassica napus NAC transcription factor 42.1 (NAC42.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462920.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-167NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A078IVI00.0A0A078IVI0_BRANA; BnaA05g34370D protein
TrEMBLA0A0D3BPG70.0A0A0D3BPG7_BRAOL; Uncharacterized protein
TrEMBLA0A397ZDB50.0A0A397ZDB5_BRACM; Uncharacterized protein
STRINGBo4g018490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-166NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]