PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC499_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 404aa MW: 45096.5 Da PI: 5.0981

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC499_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	63.8	2.8e-20	309	359	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+++++d+s+ F+lpi++AA+ L +c+T++K iCR+ + RWP+Rk+ksl RrC499_p3 309 TKKLTVKDMSELFELPIEKAARRLRICTTAVKLICRRGEVYRWPQRKLKSL 359 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.698	299	379	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-17	311	359	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MAGDGAKPMA LQDNEDEDLY YDAYSEEDLI NFMSNPNPNL MDLPFPQEPL PPPTGLLQNP 60 SLISLPKRDT IKEYLESLRI GDDSFTLDTS DLLSGDLSDC IDYTVPGEFG NDNVGESGIL 120 EASAHVFVEN AYNSEIGGSS TMPVPVITPA PTISQGVFLC TYCNLLRQLV HANGLEMMRL 180 DLYGGIGYFC HAIIETRRFD GSNELRYQTC HLMDLMMEDV KKFIEDYCVA RAASGFVIMQ 240 DTNADFYQAM NACTTNSQSL MSTLPPRVDI PVSLDMPNES LNVASVPPAV KVKGRPRKET 300 HLSAQRKRTK KLTVKDMSEL FELPIEKAAR RLRICTTAVK LICRRGEVYR WPQRKLKSLR 360 EKVAALKNVV SNSTDARARA RAEGKIEKFE KQINAIYSKA IENA

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MAGDGAKPMA LQDNEDEDLY YDAYSEEDLI NFMSNPNPNL MDLPFPQEPL PPPTGLLQNP  60
SLISLPKRDT IKEYLESLRI GDDSFTLDTS DLLSGDLSDC IDYTVPGEFG NDNVGESGIL  120
EASAHVFVEN AYNSEIGGSS TMPVPVITPA PTISQGVFLC TYCNLLRQLV HANGLEMMRL  180
DLYGGIGYFC HAIIETRRFD GSNELRYQTC HLMDLMMEDV KKFIEDYCVA RAASGFVIMQ  240
DTNADFYQAM NACTTNSQSL MSTLPPRVDI PVSLDMPNES LNVASVPPAV KVKGRPRKET  300
HLSAQRKRTK KLTVKDMSEL FELPIEKAAR RLRICTTAVK LICRRGEVYR WPQRKLKSLR  360
EKVAALKNVV SNSTDARARA RAEGKIEKFE KQINAIYSKA IENA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445336.1	0.0	PREDICTED: uncharacterized protein LOC108817191
TrEMBL	A0A3P6AMJ6	0.0	A0A3P6AMJ6_BRACM; Uncharacterized protein
STRING	Bo2g012920.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-11	RWP-RK domain-containing protein