PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4944_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YB

Protein Properties

Length: 209aa MW: 23817.2 Da PI: 6.0876

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4944_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	181.1	9.5e-57	34	129	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkvlP+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plkvyl+kyre+egek RrC4944_p4 34 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLNKYRETEGEK 129 89*******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.9E-55	27	153	IPR009072	Histone-fold
SuperFamily	SSF47113	1.42E-41	36	151	IPR009072	Histone-fold
Pfam	PF00808	3.9E-28	39	103	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.9E-19	67	85	No hit	No description
PROSITE pattern	PS00685	0	70	86	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.9E-19	86	104	No hit	No description
PRINTS	PR00615	2.9E-19	105	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MTEESPEEDH ESPGVAETNL GSPSSKNNNN SNNKEQDRFL PIANVGRIMK KVLPGNGKIS 60 KDAKETVQEC VSEFISFVTG EASDKCQREK RKTINGDDII WAITTLGFED YVAPLKVYLN 120 KYRETEGEKA NSPKQRQQQV QQNNHFQFQE QDHNNMSCTS YISHHHPSPF FPADHQPFPN 180 LPFSPKSLQK QFPQQQQHDN TDSIGQWSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-45	34	124	2	92	Transcription factor HapC (Eurofung)
4g92_B	2e-45	34	124	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC787668	0.0	KC787668.1 Brassica napus transcription factor subunit NF-YB7A (NF-YB7A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018491586.1	1e-156	PREDICTED: nuclear transcription factor Y subunit B-7-like
Swissprot	Q9SIT9	1e-115	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A3P5ZP76	1e-134	A0A3P5ZP76_BRACM; Uncharacterized protein
TrEMBL	M4D9I3	1e-134	M4D9I3_BRARP; Uncharacterized protein
STRING	Bra013143.1-P	1e-135	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	2e-99	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]