PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4911_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 307aa    MW: 33902.3 Da    PI: 6.2407
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4911_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.12.1e-154493255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                r +h+  E+rRR++iN++f+ Lrel+P++     +K + a+ L ++++Y+++Lq
  RrC4911_p2 44 RSKHSVTEQRRRSKINERFQVLRELIPNS----EQKRDTASFLLEVIDYVQYLQ 93
                899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1840113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3934292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-2242115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.89E-144497No hitNo description
PfamPF000101.0E-124493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-124898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRTGKGNQEE EDYGGGEEDF GSKREGPSSA SRDAKESDKA SALRSKHSVT EQRRRSKINE  60
RFQVLRELIP NSEQKRDTAS FLLEVIDYVQ YLQEKVQKYE GSYPGWSQEP TKLTPWRNNH  120
WRVQSLANHP VAVVNNGSVP VIPFPGKFED NTIIASAHAA VAELQNPVES VKERAIASSQ  180
PELDDKRLPV HPLVQGEQSN NNNECPAAGH GLGLSDDLVI EGGTISISTV YSHELLSSLT  240
QALQNAGIDL SHAKLSVQID LGNRANPSNK NPLSSHIDEG ATRSRNPSVE EDSEHSHKRM  300
KTLSHFS
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526891e-128AK352689.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472095.10.0PREDICTED: transcription factor BIM2-like isoform X2
SwissprotQ9CAA41e-154BIM2_ARATH; Transcription factor BIM2
TrEMBLE4MVZ21e-168E4MVZ2_EUTHA; mRNA, clone: RTFL01-03-H22
TrEMBLM4FB661e-168M4FB66_BRARP; Uncharacterized protein
TrEMBLV4MAX51e-168V4MAX5_EUTSA; Uncharacterized protein
STRINGBra038332.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-144BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]