PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC48_p16
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 550aa    MW: 60396.5 Da    PI: 5.7818
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC48_p16genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.1e-11204260155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  ++  g++ k  + g ++ +e+Aa+a++ a++k++g
  RrC48_p16 204 SIYRGVTRHRWTGRYEAHLWDnSCKrEGQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 260
                57*******************88885445536655.779999**************98 PP
2AP240.37.6e-13292337755
        AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                r++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  RrC48_p16 292 RRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 337
                899*********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-18204270No hitNo description
SuperFamilySSF541716.21E-15204270IPR016177DNA-binding domain
PfamPF008479.1E-9204260IPR001471AP2/ERF domain
SMARTSM003801.2E-22205274IPR001471AP2/ERF domain
PROSITE profilePS5103217.319205268IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-12205269IPR001471AP2/ERF domain
PRINTSPR003676.2E-6206217IPR001471AP2/ERF domain
PROSITE profilePS5103216.463286345IPR001471AP2/ERF domain
SMARTSM003802.8E-25292351IPR001471AP2/ERF domain
PfamPF008476.6E-8292337IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-14293346IPR016177DNA-binding domain
CDDcd000181.32E-19293345No hitNo description
Gene3DG3DSA:3.30.730.102.1E-14293345IPR001471AP2/ERF domain
PRINTSPR003676.2E-6327347IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MNNNWLGFSL SPYEQNHHRQ EVDSSTPTTA VDVTGEFCYN LTAASDGTSA VQTSFPSPFG  60
VVLDAFTRDT NSHSRDWDIN GSACNNIHNN EQDGPKLENF LGRTTTLYNI NENGGDGSGG  120
YGEDDGSGGS LGLSMINTWL RNQPVANVDN QENGNGARGL SLSMNSTTSC DSNNDNNSIV  180
VAQGNDSVEA APKKTIESFG QRTSIYRGVT RHRWTGRYEA HLWDNSCKRE GQTRKGRQGG  240
YDKEEKAARA YDLAALKYWG TTTTTNFPMS EYEKEVEDMK HMTRQEYVAS LRRHHQHGRW  300
QARIGRVAGN KDLYLGTFGT QEEAAEAYDI AAIKFRGLTA VTNFDMNRYN VKAILDSPSL  360
PIGSAAKRLK EANHTVPSMM RIRNNVSESE NNGSGWQNVA VQHHQRVDLS LLQGHQESYN  420
GYYNGGNVSS ESARACFKQE EDQHRFLTNI NHHSSATDDS VTVCGNVAGY GGYQGFAAPV  480
NCDAYAGAEI AYTARNQFYF AQQQHQIQQS PEGDFAAAMS NNVGSNMYFH GEGGGGGGEG  540
APTFTVWNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3179040.0AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303138.10.0AP2-like ethylene-responsive transcription factor BBM2
RefseqXP_009107515.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A3P6DJA40.0A0A3P6DJA4_BRACM; Uncharacterized protein
STRINGBra013978.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein