PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC488_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 224aa MW: 26253.6 Da PI: 10.1077 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 35.2 | 2.8e-11 | 80 | 118 | 19 | 58 |
ZF-HD_dimer 19 ghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +h+vD C fm+s ge+gta++l aAC+CH +F +e e RrC488_p5 80 AHVVDRCSKFMSS-GEDGTAESLISAACDCHQSFDWKEIE 118 79**********9.999*****************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-17 | 54 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 11.146 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.5E-11 | 80 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.74E-16 | 148 | 221 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 151 | 222 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.5E-24 | 160 | 217 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEIRDKKENG DGKTKIISKP SDHRQRETHH RKKWSNPDLD FDRNPIYLAD PAPRSHARPQ 60 TTSPTRSTDI NNANGTTRRA HVVDRCSKFM SSGEDGTAES LISAACDCHQ SFDWKEIEGM 120 FVLWMTFWGG GGKDPTESLT EDLNKFHQSF SVDQSQYHPK KRFRTKFSQE HKETMMEFSK 180 KIGWRMSKLE DNELNLFCRE TNVKRQVFKV WMHNNKQRAK KKVM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-17 | 161 | 216 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006439 | 2e-49 | AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence. | |||
GenBank | AY088255 | 2e-49 | AY088255.1 Arabidopsis thaliana clone 4845 mRNA, complete sequence. | |||
GenBank | CP002685 | 2e-49 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596192.1 | 3e-87 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
Swissprot | Q9ZPW7 | 3e-73 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A078JWH8 | 2e-89 | A0A078JWH8_BRANA; BnaCnng71430D protein | ||||
STRING | Bo7g011260.1 | 1e-86 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6515 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 1e-75 | homeobox protein 24 |