PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4790_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HSF

Protein Properties

Length: 143aa MW: 16645.6 Da PI: 10.6758

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4790_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	40.9	5.7e-13	13	96	2	89
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F +ly+i+ed++ +++isws +n+nsf+v+d +++ +++L k +n+ F+ +L gFk v + ++ eF+h+ F ++ RrC4790_p4 13 FYLQLYQIVEDRSSDQIISWSkTNKNSFIVWDLKRLRSDILLKfsSVLGRNLPEFLAKLRSHGFKPVFKGPGE-------LEFEHDDFARS 96 8899***************8889************982234579*************999998.......9****9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.5E-9	9	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.5E-14	9	96	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.58E-11	10	96	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.9E-10	13	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-5	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-5	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MVCKLPTGSF SSFYLQLYQI VEDRSSDQII SWSKTNKNSF IVWDLKRLRS DILLKFSSVL 60 GRNLPEFLAK LRSHGFKPVF KGPGELEFEH DDFARSPLMK KMMAKALSDR IERFDAQIKT 120 LKCRLKAKKA SIKVENLFQN LRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018479639.1	1e-98	PREDICTED: heat stress transcription factor A-4a-like
TrEMBL	A0A078HHE2	1e-82	A0A078HHE2_BRANA; BnaC04g32170D protein
TrEMBL	A0A0D3C016	1e-82	A0A0D3C016_BRAOL; Uncharacterized protein
STRING	Bo4g139630.1	2e-83	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	1e-26	Winged helix-turn-helix transcription repressor DNA-binding