PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4790_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 155aa MW: 17963.2 Da PI: 10.9765 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 33.8 | 9.1e-11 | 13 | 95 | 2 | 90 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 F +ly++++d++ + +isws +n++sfvv+d ++++ +L++ + +++F +L gF++v++ + eF+h+ F +g RrC4790_p2 13 FFLQLYQVVNDRSSDPIISWSkSNNHSFVVWDLKKLHI-LLKSsSVLGRTLTAFWVKLSSNGFRSVEKGPGV-------FEFEHDDFARGP 95 8999*****************8899***********99.665427788899****************99976.......********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.0E-12 | 8 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.9E-6 | 9 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.99E-9 | 10 | 95 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.9E-8 | 13 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MVRKLPTRSS SSFFLQLYQV VNDRSSDPII SWSKSNNHSF VVWDLKKLHI LLKSSSVLGR 60 TLTAFWVKLS SNGFRSVEKG PGVFEFEHDD FARGPLMKKM MVKPLSERIE TEKMMVKALS 120 ERIERFDAQI KIIKCRLKAK KASLKVETLF QNLRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481369.1 | 1e-106 | PREDICTED: heat stress transcription factor A-6a-like | ||||
TrEMBL | A0A078HHE2 | 2e-67 | A0A078HHE2_BRANA; BnaC04g32170D protein | ||||
TrEMBL | A0A0D3C016 | 2e-67 | A0A0D3C016_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g139630.1 | 3e-68 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 2e-17 | Winged helix-turn-helix transcription repressor DNA-binding |