PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4772_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | VOZ | ||||||||
Protein Properties | Length: 163aa MW: 18336.7 Da PI: 10.3543 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 153.9 | 1e-47 | 29 | 115 | 130 | 216 |
VOZ 130 pdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlt 216 dysgrgwhesrkq+mke++g+krsyymdpqp++ fewh++ey+ine+d +alyrlelk++++kks+kg+v+kd+ladlqkk+g+lt RrC4772_p3 29 LDYSGRGWHESRKQLMKEQAGQKRSYYMDPQPPGLFEWHIFEYQINESDVCALYRLELKQTNGKKSPKGRVAKDPLADLQKKMGQLT 115 59***********************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MQLQERFSHL QAARKEGRLG DHAVRAKTLD YSGRGWHESR KQLMKEQAGQ KRSYYMDPQP 60 PGLFEWHIFE YQINESDVCA LYRLELKQTN GKKSPKGRVA KDPLADLQKK MGQLTPEGAS 120 DKPSPPTKGR TKATKGVKLA TPATTVAQPD VSNNHTKEPS SHQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013636082.1 | 4e-72 | PREDICTED: transcription factor VOZ2-like | ||||
Refseq | XP_013636083.1 | 4e-72 | PREDICTED: transcription factor VOZ2-like | ||||
Refseq | XP_013636084.1 | 4e-72 | PREDICTED: transcription factor VOZ2-like | ||||
Swissprot | Q9SLB9 | 4e-56 | VOZ2_ARATH; Transcription factor VOZ2 | ||||
TrEMBL | A0A0D3C5T6 | 1e-70 | A0A0D3C5T6_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g191510.1 | 2e-71 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42400.1 | 2e-58 | vascular plant one zinc finger protein 2 |
Publications ? help Back to Top | |||
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