PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4755_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 613aa    MW: 68824.4 Da    PI: 6.8121
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4755_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.32.1e-2852136187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e g+ r++k+Ckek+en+ k++k++keg+ ++++++  t+++fdqlea
  RrC4755_p1  52 RWPRQETLALLKIRSDMGIAFRDASVKGPLWEEVSRKMAELGYIRNSKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 136
                 8********************************************************************975544..6*******85 PP
2trihelix104.29.6e-33409494187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k e+ aLi++r++++++++++  k+plWee+s+ m++ gf+r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  RrC4755_p1 409 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMKRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 494
                 8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.2449111IPR001005SANT/Myb domain
CDDcd122032.32E-2151116No hitNo description
PROSITE profilePS500907.02751109IPR017877Myb-like domain
PfamPF138371.2E-1751137No hitNo description
SMARTSM007170.0023406468IPR001005SANT/Myb domain
PROSITE profilePS500907.108408466IPR017877Myb-like domain
PfamPF138374.2E-22408495No hitNo description
Gene3DG3DSA:1.10.10.606.6E-4408465IPR009057Homeodomain-like
CDDcd122032.36E-26409473No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MQLGGSTTTA ATASAPPPSN DSATIEAAAA AAAVGAFEVS EEMNDRGFGG NRWPRQETLA  60
LLKIRSDMGI AFRDASVKGP LWEEVSRKMA ELGYIRNSKK CKEKFENVYK YHKRTKEGRT  120
GKSEGKTYRF FDQLEALETR PTSSSLHHQQ QQQPPPPQTQ PQPLQPQPPL RPHNNNISMF  180
STPPPVTTIM PPITNPTVPP YTQPVNVPSF PNISGDFLSD NSTSSSHSTS SDVDIGDGTT  240
TTRKKKRKRK WKEFFERLTR QVVDKQEELQ RKFLEAVEKR EHERMVREES WRVQEIARIN  300
RERDILAQER SMSAAKDAAV MAFLQKLSEK PNPQGQSVPQ PQPQPQPPPS QMQVNNNNNQ  360
QTPQPRPPPP TTQPTQPVTP TIETAKTDNG DQNMTPASAS AAGAASSSRW PKVEIEALIK  420
LRTNLDSKYQ ENGPKGPLWE EISAGMKRLG FNRNSKRCKE KWENINKYFK KVKESNKKRP  480
EDSKTCPYFH QLDALYRERN KFHTNNNVVA SSSSTSGLVK PDNSVPLMVQ PEQQWPPAMA  540
TTTMTSTVAA TAQPDQHPPP PPQPLDQNFD DDEGTDGEEY DDEEDYEENE EEEGGEFELV  600
PSNNNNNKPT NNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243249KKKRKRK
2244249KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892030.0AC189203.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446335.10.0PREDICTED: trihelix transcription factor GT-2
SwissprotQ391171e-142TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3N6RHY00.0A0A3N6RHY0_BRACR; Uncharacterized protein
STRINGBra003703.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.10.0Trihelix family protein