PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC471_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 199aa MW: 22714.2 Da PI: 6.6386

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC471_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.6e-14	85	129	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+++E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky RrC471_p1 85 PWSEDEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 129 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.301	78	134	IPR017930	Myb domain
SuperFamily	SSF46689	4.04E-16	80	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-16	81	133	IPR006447	Myb domain, plants
SMART	SM00717	5.0E-10	82	132	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-10	84	128	IPR009057	Homeodomain-like
CDD	cd00167	2.75E-9	85	130	No hit	No description
Pfam	PF00249	4.6E-12	85	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MFEEALVFFP EGSPNRWERI GYQLQKPAGE VREHYEALVH DVFQIDSGQV NVPDYIDDSA 60 AGWDSAGQIS FGTKHGERER KRGTPWSEDE HKLFLIGLKR YGKGDWRSIS RNVVVTRTPT 120 QVASHAQKYF LRQNSVKKER KRSSIHDITT VDTNLAMPGS NVEWTGQQES PVRTQQQIVS 180 EFSQQMTPGG HFEDFGFGI

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189388	1e-114	AC189388.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053D06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018464971.1	1e-145	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	3e-49	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A3P6AKD4	1e-130	A0A3P6AKD4_BRACM; Uncharacterized protein
STRING	Bo2g006670.1	1e-130	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5127	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-113	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]