PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4716_p6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 276aa    MW: 31971.2 Da    PI: 6.8065
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4716_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK74.11.7e-23152200452
      RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 ++s e +++yF++p+++AAkeL+v+lT+LK++ R++GI+RWPhRk+ s+
  RrC4716_p6 152 SLSREAIKQYFYMPLTKAAKELNVGLTLLKKKSRELGISRWPHRKLMSI 200
                 6899******************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.153135220IPR003035RWP-RK domain
PfamPF020422.2E-20153200IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MTDHKPPQTW SQFDDYESFV QEENLFSLLN HSLPFDYSSF TDNPFSDIQT HSWFSFQDII  60
NVDPISTRFT AGDHMLTDSV DIEAISAFSQ DVLSGSWNAI TGNFNNHFEP IRDVSSIGIP  120
NTEMILHESN NAMKETISHK RRERKDGVLV RSLSREAIKQ YFYMPLTKAA KELNVGLTLL  180
KKKSRELGIS RWPHRKLMSI QGVITNLLDD LGKTDDEMIR KKLRNALEIL EREKKMIEED  240
PNLEFGEETK RLRQACFKAN HKRRRLLSIS NTSFVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261265KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436241.10.0PREDICTED: protein RKD3-like
SwissprotQ9FGD11e-93RKD3_ARATH; Protein RKD3
TrEMBLA0A0D3D8A11e-162A0A0D3D8A1_BRAOL; Uncharacterized protein
STRINGBo7g064180.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121801932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.14e-96RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]