PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4716_p6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Nin-like | ||||||||
Protein Properties | Length: 276aa MW: 31971.2 Da PI: 6.8065 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 74.1 | 1.7e-23 | 152 | 200 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++s e +++yF++p+++AAkeL+v+lT+LK++ R++GI+RWPhRk+ s+ RrC4716_p6 152 SLSREAIKQYFYMPLTKAAKELNVGLTLLKKKSRELGISRWPHRKLMSI 200 6899******************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.153 | 135 | 220 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.2E-20 | 153 | 200 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MTDHKPPQTW SQFDDYESFV QEENLFSLLN HSLPFDYSSF TDNPFSDIQT HSWFSFQDII 60 NVDPISTRFT AGDHMLTDSV DIEAISAFSQ DVLSGSWNAI TGNFNNHFEP IRDVSSIGIP 120 NTEMILHESN NAMKETISHK RRERKDGVLV RSLSREAIKQ YFYMPLTKAA KELNVGLTLL 180 KKKSRELGIS RWPHRKLMSI QGVITNLLDD LGKTDDEMIR KKLRNALEIL EREKKMIEED 240 PNLEFGEETK RLRQACFKAN HKRRRLLSIS NTSFVS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 261 | 265 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436241.1 | 0.0 | PREDICTED: protein RKD3-like | ||||
Swissprot | Q9FGD1 | 1e-93 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | A0A0D3D8A1 | 1e-162 | A0A0D3D8A1_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g064180.1 | 1e-163 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12180 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 4e-96 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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