PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4711_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HB-other

Protein Properties

Length: 869aa MW: 96569.5 Da PI: 7.1262

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4711_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.4	3.6e-06	51	107	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F+ + +s++e +e+++ g++ +qV+ +F +++k kk RrC4711_p1 51 KRPRDLLNPKAVKYMQTVFAIKDSISKKESREISALFGISVAQVRDFFATQKIKVKK 107 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.151	48	108	IPR001356	Homeobox domain
SMART	SM00389	2.2E-4	50	112	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-4	51	114	IPR009057	Homeodomain-like
CDD	cd00086	8.79E-4	51	108	No hit	No description
SuperFamily	SSF46689	2.44E-5	51	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 869 aa Download sequence Send to blast
MDDAFKEEIE IGSSVESLME LLNSQKMIFH SQIDQLQDVV AAGALSIKIG KRPRDLLNPK 60 AVKYMQTVFA IKDSISKKES REISALFGIS VAQVRDFFAT QKIKVKKQVR LSREKLMMST 120 THAIQGDGVM EQNSAVPHAE PLPLNSMDPE ASSISWGEGE TPALMPKEDV QEEDVPPDIS 180 DSDKYFVDNI FSLLRREETF LGQMKLMEWI MQIQDSSVLI WFLSKGGVLI LTTWLSQAAT 240 EEQTSVLLLI LKVLCHLPLH KASPENIIAE IMGDKTNPED ILSISNGRSE NGRRLKSSQG 300 PKLLLTSADD STRKHMLGST PSYNKERRKV QMVEQPGQKA AGRGPQTVRI GTSGRSRPMS 360 ADDIQKAKMR ALYMNSKNIK KDTLPSAIGD TRTVVPEKPL AIQSVKDSPP SQSNEAKTEN 420 TPEPSAVQFP PSQNNEAKTE DKPEPSAVQQ PVTVNVLVQP VSSPAVNVPV QADEFRNRKL 480 STPPKSISSK VGVLSRMSPQ TILKNCKREQ IEWHVPPGMV LDELWRVAAG ANSKEADVQK 540 NRNRREKETT YQSLQTIPLN PKEPWDRELD FDDSLTPEIP SQQPQEESIT EPQDSLDERR 600 TAAGAASTSS SQSSSVEPDY ELLAALLKNP DLLHALTSGQ PGNLAGQDMV KLLDVIKTGA 660 PNLSSSSNMK VDEQVEVSLP SPTPSTNPGM SGWGQEVTRN PFSRQTQVGA SVARMSTRLP 720 VASMQWQPSN GQSIPQHTPS AYNSFTLPHT ERQHQQRMQP RLHQNQHLQQ QPISTTSYVV 780 RESVGKMDIG TSASWRSQQS QNSYYSHQAN GIGSDASYQG NEQYMTSSNP GYESWSPDNS 840 PSRNHPNMRG QQQPSRKHDP YWNQNKRWR

Sequence ? help Back to Top

Protein Sequence Length: 869 aa Download sequence Send to blast

MDDAFKEEIE IGSSVESLME LLNSQKMIFH SQIDQLQDVV AAGALSIKIG KRPRDLLNPK  60
AVKYMQTVFA IKDSISKKES REISALFGIS VAQVRDFFAT QKIKVKKQVR LSREKLMMST  120
THAIQGDGVM EQNSAVPHAE PLPLNSMDPE ASSISWGEGE TPALMPKEDV QEEDVPPDIS  180
DSDKYFVDNI FSLLRREETF LGQMKLMEWI MQIQDSSVLI WFLSKGGVLI LTTWLSQAAT  240
EEQTSVLLLI LKVLCHLPLH KASPENIIAE IMGDKTNPED ILSISNGRSE NGRRLKSSQG  300
PKLLLTSADD STRKHMLGST PSYNKERRKV QMVEQPGQKA AGRGPQTVRI GTSGRSRPMS  360
ADDIQKAKMR ALYMNSKNIK KDTLPSAIGD TRTVVPEKPL AIQSVKDSPP SQSNEAKTEN  420
TPEPSAVQFP PSQNNEAKTE DKPEPSAVQQ PVTVNVLVQP VSSPAVNVPV QADEFRNRKL  480
STPPKSISSK VGVLSRMSPQ TILKNCKREQ IEWHVPPGMV LDELWRVAAG ANSKEADVQK  540
NRNRREKETT YQSLQTIPLN PKEPWDRELD FDDSLTPEIP SQQPQEESIT EPQDSLDERR  600
TAAGAASTSS SQSSSVEPDY ELLAALLKNP DLLHALTSGQ PGNLAGQDMV KLLDVIKTGA  660
PNLSSSSNMK VDEQVEVSLP SPTPSTNPGM SGWGQEVTRN PFSRQTQVGA SVARMSTRLP  720
VASMQWQPSN GQSIPQHTPS AYNSFTLPHT ERQHQQRMQP RLHQNQHLQQ QPISTTSYVV  780
RESVGKMDIG TSASWRSQQS QNSYYSHQAN GIGSDASYQG NEQYMTSSNP GYESWSPDNS  840
PSRNHPNMRG QQQPSRKHDP YWNQNKRWR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226746	0.0	AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471087.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS isoform X2
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A3N6SCE0	0.0	A0A3N6SCE0_BRACR; Uncharacterized protein
STRING	Bo2g100790.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]