PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC459_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TALE

Protein Properties

Length: 637aa MW: 70169.8 Da PI: 7.1001

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC459_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	435	472	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + RrC459_p3 435 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 472 664559******************************88 PP
2	BELL	122.2	2.2e-39	293	364	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ RrC459_p3 293 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAAIPYTALAQKAMSRHFRCLKDAVAAQL 364 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	9.9E-76	219	362	IPR006563	POX domain
Pfam	PF07526	4.2E-50	224	361	IPR006563	POX domain
PROSITE profile	PS50071	12.568	413	476	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	416	480	IPR001356	Homeobox domain
CDD	cd00086	2.29E-12	416	477	No hit	No description
SuperFamily	SSF46689	2.74E-17	417	483	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.2E-29	419	482	IPR009057	Homeodomain-like
Pfam	PF05920	3.1E-18	433	472	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence Send to blast
MDEESSVPRS GIPVYEPAGM LSEMFNFHRS SGGGGGVDLD HSQSFRLNRQ LLEQQHQNIP 60 AINATDSAAA MRLFLMNPPP PQQPPSTRSH HGSSTLHMLL PNPSHHQGYT NTMSMHQLPH 120 QQLTWQPSSD HHNRQTEIGT VHVENSGVQG LSLSLSSSLE AAAKAEEYRK IYHGSNLSSH 180 HQYNEFKTLL ADSSQQHHHH QVSNQFISSP AVASSSSSIG AVNILRNSRY TKAAKELLEE 240 FCSVGRGFSK KNKLKNNSNP NISAGDGSSS GGGGGSPSSV GAIKEQPPLP ASDRIEHQRR 300 KVKLLTMLEE VDRRYNHYCE QMQMVVNSFD IVMGHGAAIP YTALAQKAMS RHFRCLKDAV 360 AAQLRHSCEL LGDKDAAGIS SLGLTKGETP RLRLLEQSLR QQRAFHQMGM MEQEAWRPQR 420 GLPERSVNIL RAWLFEHFLH PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMVEE 480 MYQQESKERE EGLEENEQED QETKNNDKST KPNNNESNFT AVRTTTQTPT TAATPPDAGH 540 RLRSAADINA YENDPSSSSY SNAAAVVSSY GGSAAFSAVA TCQQGVGGFD DAEMDGDNVI 600 RFGANPTGDV SLTLGLRHAG NMPDKNASFC VRDFGGF

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence Send to blast

MDEESSVPRS GIPVYEPAGM LSEMFNFHRS SGGGGGVDLD HSQSFRLNRQ LLEQQHQNIP  60
AINATDSAAA MRLFLMNPPP PQQPPSTRSH HGSSTLHMLL PNPSHHQGYT NTMSMHQLPH  120
QQLTWQPSSD HHNRQTEIGT VHVENSGVQG LSLSLSSSLE AAAKAEEYRK IYHGSNLSSH  180
HQYNEFKTLL ADSSQQHHHH QVSNQFISSP AVASSSSSIG AVNILRNSRY TKAAKELLEE  240
FCSVGRGFSK KNKLKNNSNP NISAGDGSSS GGGGGSPSSV GAIKEQPPLP ASDRIEHQRR  300
KVKLLTMLEE VDRRYNHYCE QMQMVVNSFD IVMGHGAAIP YTALAQKAMS RHFRCLKDAV  360
AAQLRHSCEL LGDKDAAGIS SLGLTKGETP RLRLLEQSLR QQRAFHQMGM MEQEAWRPQR  420
GLPERSVNIL RAWLFEHFLH PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMVEE  480
MYQQESKERE EGLEENEQED QETKNNDKST KPNNNESNFT AVRTTTQTPT TAATPPDAGH  540
RLRSAADINA YENDPSSSSY SNAAAVVSSY GGSAAFSAVA TCQQGVGGFD DAEMDGDNVI  600
RFGANPTGDV SLTLGLRHAG NMPDKNASFC VRDFGGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-16	422	480	5	63	Homeobox protein Meis2
3k2a_B	1e-16	422	480	5	63	Homeobox protein Meis2
4xrs_A	1e-16	422	479	1	58	Homeobox protein Meis1
4xrs_B	1e-16	422	479	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018470866.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Swissprot	Q9SW80	0.0	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A3P6FFH0	0.0	A0A3P6FFH0_BRAOL; Uncharacterized protein (Fragment)
STRING	Bo1g005330.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	0.0	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]