PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4586_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 326aa    MW: 35955 Da    PI: 6.1604
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4586_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-10159206455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  RrC4586_p1 159 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 206
                 8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-17153225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-11153210No hitNo description
PROSITE profilePS5088815.542155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17155224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7159206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MENESIKYLP LGQSDPFGNE GTIGDLLGRF CNNPPQEIRF PPYPGQFGSD QLTGQDSNKS  60
SLLDPDSDHR VQTAKPNSRK RKSIPVSVSG GNGKDSPASS SLTASNSKVS GEIVGSKRSK  120
QDEAGSSKNV IDNKDDAKPP EPPKDYIHVR ARRGQATDSH SLAERARREK ISERMTLLQD  180
LVPGCNRITG KAVMLDEIIN YVQSLQRQVE FLSMKLATIN PRMEFNPNAA LSTEMIQPGE  240
SLTQSLYAMA CSEQRIPSGY YSLAKNMPRF SDTHFPSSDG FVQAETQGFW ENYLQSVVQM  300
GFGDVQQQSN NNNSCSEPTL QMKLEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0654410.0AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBankAY0965360.0AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432853.10.0PREDICTED: transcription factor bHLH77-like
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLA0A0D3D5D30.0A0A0D3D5D3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E9G20.0A0A3P6E9G2_BRAOL; Uncharacterized protein
STRINGBo7g039150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-155bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]