PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC456_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 362aa    MW: 39469.1 Da    PI: 6.1927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC456_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09194241455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  RrC456_p7 194 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 241
                8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.68E-9188245No hitNo description
SuperFamilySSF474592.22E-15188259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-15190258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6194241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDLTGAFGAR SAAVEPCREP PGLESLHLGG GDGGFTALLE LPPTQAVELL HFADPSPSPS  60
QTAVAGIGLD VSPPPLHHSY GALTFPSNSV LLERAARFSV MANEQLLQNG NVSGETTTTS  120
SVPSNSNSNL DRVKTEPGET DSSSQRLEND RCGKRKEVDK KVKGSAKKKS KSSEENEKLP  180
YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL  240
QRQVEMLSMR LAAVNPRIDF NLDAILASEN GSLMDGSFNG TAMQLAWPHQ VTEAEQSFHH  300
RQLQLQQPPP QQQWPYDGLN QPTAWGREEE QGHGNEHTSL MAVSENMMVG SASLHPNQVK  360
ME
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527280.0AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432699.10.0PREDICTED: transcription factor bHLH60-like
SwissprotQ3EAI11e-175BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A397Y3N30.0A0A397Y3N3_BRACM; Uncharacterized protein
STRINGBra007358.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-164bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]