PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4547_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 166aa    MW: 18430.6 Da    PI: 9.8434
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4547_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-201564255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr+++ +gr++AeIrdp++   ++r++lg+f+t+e Aa+a+++a+ +++g
  RrC4547_p1 15 RYRGVRRRP-WGRYAAEIRDPTK---KTRVWLGTFDTPEAAARAYDKAAFQFRG 64
                7********.**********864...6***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-141564IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-321572IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-231573IPR016177DNA-binding domain
CDDcd000181.95E-231572No hitNo description
SMARTSM003801.1E-361578IPR001471AP2/ERF domain
PROSITE profilePS5103224.7641572IPR001471AP2/ERF domain
PRINTSPR003675.8E-111627IPR001471AP2/ERF domain
PRINTSPR003675.8E-113854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAPTVKPDGG NKENRYRGVR RRPWGRYAAE IRDPTKKTRV WLGTFDTPEA AARAYDKAAF  60
QFRGAKAKTN FPLPFFVGGN NESPSQSSTV ESPTSTIPDL NLGCFSSADS RFPFPKIQVK  120
SGVIVFDEES ARSESDSSSV VMDLSSERRP RVFLDLDLNL PPKPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-231078978Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8877551e-173DQ887755.1 Brassica rapa subsp. pekinensis putative ethylene-responsive element binding factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450479.14e-95PREDICTED: ethylene-responsive transcription factor 11-like
SwissprotQ9C5I32e-51ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLA0A397YD071e-75A0A397YD07_BRACM; Uncharacterized protein
TrEMBLM4D3271e-75M4D327_BRARP; Uncharacterized protein
STRINGBra010880.1-P2e-76(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-38ERF domain protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dubois M, et al.
    The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.
    Plant Physiol., 2015. 169(1): p. 166-79
    [PMID:25995327]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Zhou X, et al.
    The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling.
    Plant Physiol., 2016. 171(4): p. 2760-70
    [PMID:27255484]