PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4504_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 378aa MW: 43355.1 Da PI: 8.6825 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.5 | 3.1e-10 | 94 | 118 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C f++++G C yG +C+F+H+p RrC4504_p1 94 VADCYFYLKNGRCGYGLSCRFNHPP 118 689********************97 PP | |||||||
2 | zf-CCCH | 36.1 | 1.1e-11 | 132 | 156 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + Cr +++tG+C+yG++C+F+H+p RrC4504_p1 132 ARDCRQYLQTGQCSYGPKCRFNHSP 156 589********************96 PP | |||||||
3 | zf-CCCH | 35.4 | 1.9e-11 | 170 | 192 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+ +++tG C+yG++C+F+H+p RrC4504_p1 170 DCKQYLQTGRCSYGPKCRFNHPP 192 5********************97 PP | |||||||
4 | zf-CCCH | 21.8 | 3.4e-07 | 202 | 224 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+ff++ G C yG+ CkF H+ RrC4504_p1 202 RQNCKFFQK-GSCTYGSGCKFTHS 224 568******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.0E-5 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.338 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-7 | 94 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-5 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-5 | 129 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-6 | 132 | 156 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-9 | 132 | 156 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-6 | 135 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-6 | 165 | 192 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.915 | 165 | 193 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 170 | 192 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-9 | 170 | 192 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-6 | 171 | 190 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 199 | 226 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 201 | 224 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 201 | 225 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-5 | 202 | 224 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-5 | 205 | 225 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
METEDAKETD TRTESTSMEE TEEQDTDLRT RGSYGRTDGR RERDPRSSGE KKVKKLIKNS 60 LLCSVLYHYA KTESTRFSQE NATQTSEYPA RTGVADCYFY LKNGRCGYGL SCRFNHPPMR 120 HEMVQPSPYP GARDCRQYLQ TGQCSYGPKC RFNHSPAPVL PERVSLGAID CKQYLQTGRC 180 SYGPKCRFNH PPAPVLSQWV SRQNCKFFQK GSCTYGSGCK FTHSMSGDGA ETMRQDTPRG 240 KKRHGANSSA RPWKRERQQA HDLEEQKQKK REVENLRIGP SVQSGEGGIQ TEQRLEEIPE 300 NPNVNAQENL QEQADMERQN REAQEKAQEE RRQQIDNARR ESRLRLERMK PRALTSNVDQ 360 LREALPDIGI DRKEGDGF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486806.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 42-like | ||||
TrEMBL | A0A0D3D605 | 1e-174 | A0A0D3D605_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g045330.1 | 1e-175 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14832 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 2e-21 | C3H family protein |