PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC44_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 718aa MW: 81012.8 Da PI: 6.4719

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC44_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.6	2.1e-23	102	187	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+++GF +r+++s ++++++e + ++C++eg+++ ++ + ++++r+etrtgC+a++++++ + ++w++++++l+HnH++ RrC44_p4 102 YYNTYARDLGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTVKEPN---NSTRRKETRTGCQAMIRLRLIELDRWKIDEVKLDHNHSFD 187 8**************************************99888...889999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-20	102	187	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-24	303	397	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.716	593	639	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.5E-6	611	638	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-5	614	641	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MDDSNAYSPP DQSLSSNSNL CITVLPSIEE GSQSSEQLVV VQDRDDDLPI VGDNNPPPPD 60 LHDCDGLLTE FPAQSNESEK CSMSAPPATG MEFDSYDDAY TYYNTYARDL GFAIRVKSSW 120 TKRNSKEKRG AVLCCNCEGF KTVKEPNNST RRKETRTGCQ AMIRLRLIEL DRWKIDEVKL 180 DHNHSFDPER AHNSKSHKKA CGGGSAATKR KPEPPLNVQV RTIKLYRRTD AIDSNGETSH 240 DQSHSSRRLD LSFRVLNDFF LQSQLTNPNF FYSMDLGDDG GGLRNVFWIE SRARAAYSHF 300 RDVVVFDTTC LSNAYDLPLV AFVGINHHGD SILLGCGLVA DTKSSETYVW LFRAWLTCMS 360 GRPPQTFVTE HCKPMQTAVS EVFPRAHHRL SLTHVLQTIF RSVVDDDDGV LQDSESFRVA 420 LNRVVYGYLK VEEFEVAWEG MINRFGLTNH ETVRGLFQDR EQWAPVYLKD TFLAGGLTFR 480 LGNAAAPFIF SSFVHQQTSL REFLQGYESF LDKKYANEAL CDAESSKSIP ELKTTHPYES 540 QMAKVFTKEI FTRFQEEVSA TSSCSGVTQV HSNGGSASTY VVKEREGEKV REFEVVYETN 600 AAAAAGGGAA QVRCFCVCGG FSFNGYQCRH VLLLLSHKGL EEIPSQYILQ RWRKDVKRLY 660 VADFGSGCVD ITNPVQWYEH LHRRAMQVVE QGMRSKEHCR VAWEAFKESV NRVTDKSS

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MDDSNAYSPP DQSLSSNSNL CITVLPSIEE GSQSSEQLVV VQDRDDDLPI VGDNNPPPPD  60
LHDCDGLLTE FPAQSNESEK CSMSAPPATG MEFDSYDDAY TYYNTYARDL GFAIRVKSSW  120
TKRNSKEKRG AVLCCNCEGF KTVKEPNNST RRKETRTGCQ AMIRLRLIEL DRWKIDEVKL  180
DHNHSFDPER AHNSKSHKKA CGGGSAATKR KPEPPLNVQV RTIKLYRRTD AIDSNGETSH  240
DQSHSSRRLD LSFRVLNDFF LQSQLTNPNF FYSMDLGDDG GGLRNVFWIE SRARAAYSHF  300
RDVVVFDTTC LSNAYDLPLV AFVGINHHGD SILLGCGLVA DTKSSETYVW LFRAWLTCMS  360
GRPPQTFVTE HCKPMQTAVS EVFPRAHHRL SLTHVLQTIF RSVVDDDDGV LQDSESFRVA  420
LNRVVYGYLK VEEFEVAWEG MINRFGLTNH ETVRGLFQDR EQWAPVYLKD TFLAGGLTFR  480
LGNAAAPFIF SSFVHQQTSL REFLQGYESF LDKKYANEAL CDAESSKSIP ELKTTHPYES  540
QMAKVFTKEI FTRFQEEVSA TSSCSGVTQV HSNGGSASTY VVKEREGEKV REFEVVYETN  600
AAAAAGGGAA QVRCFCVCGG FSFNGYQCRH VLLLLSHKGL EEIPSQYILQ RWRKDVKRLY  660
VADFGSGCVD ITNPVQWYEH LHRRAMQVVE QGMRSKEHCR VAWEAFKESV NRVTDKSS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232471	0.0	AC232471.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026K21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445352.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A397YMV2	0.0	A0A397YMV2_BRACM; Uncharacterized protein
STRING	Bo6g080100.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]