PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4452_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Nin-like | ||||||||
Protein Properties | Length: 243aa MW: 28176.2 Da PI: 6.8914 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 78.6 | 6.9e-25 | 120 | 169 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s+e++s+yF++pi++AA eL+v+lT+LKr+CR++G +RWPhRk+ sl RrC4452_p3 120 KALSMETISRYFYMPITQAATELDVGLTLLKRRCRELGFARWPHRKLMSL 169 789********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.586 | 102 | 190 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.8E-20 | 122 | 169 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSYHKLNEEK PFSFLPYSPS FDDIHSSLTY PSLEWEEEHL FMNNSVYEAF PLPTPSLPLP 60 DLEPLSLDVL DSYSSWNVTE QNRGEGDLEM NTEHEAVQEK PNQRKLNRDI TTNTAISTPK 120 ALSMETISRY FYMPITQAAT ELDVGLTLLK RRCRELGFAR WPHRKLMSLL ALISKAKKME 180 GGEKAGKLKN ALLEMLENRK RMIEENPDLE FDDKTKRLRQ ACFKATHKMK KKASLKSDHF 240 SEF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018460348.1 | 1e-167 | PREDICTED: protein RKD2-like | ||||
Refseq | XP_018460357.1 | 1e-167 | PREDICTED: protein RKD2-like | ||||
Swissprot | Q9CA66 | 6e-90 | RKD2_ARATH; Protein RKD2 | ||||
TrEMBL | A0A3P6AX93 | 1e-136 | A0A3P6AX93_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CVA6 | 1e-136 | M4CVA6_BRARP; Uncharacterized protein | ||||
STRING | Bra008153.1-P | 1e-136 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74480.1 | 5e-68 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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