PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC444_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 300aa MW: 32342.4 Da PI: 9.1936

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC444_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.1	7.8e-38	77	136	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GG lrnvPvGgg r+n++++ RrC444_p4 77 EAALKCPRCESTNTKFCYFNNYSLTQPRHFCKGCRRYWTRGGVLRNVPVGGGYRRNRRTK 136 7789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-32	64	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-31	79	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MVFSSIQAYL DSSNWQQAPP SNYNQTGAGA SETGGHGLCP QLLQQSQPLS NGSGGSGSIR 60 PGSMVDRARQ ANIAMPEAAL KCPRCESTNT KFCYFNNYSL TQPRHFCKGC RRYWTRGGVL 120 RNVPVGGGYR RNRRTKSSSN NNNNSTATSN NTSFSSEASG NASTISAILS SNYGGNHESI 180 LSQFLSPGRL MNPNYNQHLG ELLDNTKTDN SMSLFNYGGL SQDLRSVHMG TSGGLLMSCV 240 DPSSNGFYPF ESPRTTSASF SSALASQFSS VKVEDNPYKW VNVNGNSSSW TDLSTFGSSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	133	RNVPVGGGYRRNRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:30626969}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189307	1e-154	AC189307.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033O04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018474703.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
Swissprot	O80928	1e-143	DOF24_ARATH; Dof zinc finger protein DOF2.4
TrEMBL	A0A3P6AIE6	1e-165	A0A3P6AIE6_BRAOL; Uncharacterized protein
STRING	Bra000008.1-P	1e-157	(Brassica rapa)
STRING	Bo3g031830.1	1e-157	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11354	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-128	DNA binding with one finger 2.4

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]