PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4426_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 598aa    MW: 65975.1 Da    PI: 6.1898
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4426_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.97.4e-20159245186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  + +L++a++++ ++l+rg+l++ +We+v++ +  r +++ +s +qCk+k++nl+kryk ++++++++  +s s++p+f+++e
  RrC4426_p1 159 EWSDAAITCLLDAYSDKFTQLNRGNLRGRDWEDVAATVseRCEKLIKSVEQCKNKIDNLKKRYKLERHRMSSG-GTSASHWPWFKKME 245
                 5*************************************77788999**************************9.666779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-21157247No hitNo description
Gene3DG3DSA:3.40.1160.102.6E-11292355IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.21E-20300440IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006963.9E-6358424IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.102.8E-14361439IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MASCDDDFSL LGEDQSNPNQ HHHHHHQVLH HAPYAPRRFA PKLSNQIHVP HHQSNGDEDD  60
EHHHDVVASS AFHGVNPFSA DESSNPYDNN NNAAVDGDED LDANRSRIGG VRLEKRQSQE  120
ELSDGGTTNG GETTPYGSFK RPRTSSSSAA GEYRKDREEW SDAAITCLLD AYSDKFTQLN  180
RGNLRGRDWE DVAATVSERC EKLIKSVEQC KNKIDNLKKR YKLERHRMSS GGTSASHWPW  240
FKKMEEIVGN SMTTKGASDE DRSGSSLGNA AKPARRYPLV TYSPGVQINN VKSKATSNPR  300
WRRVVLKISG AALACTGPNN IDPKIVGLIA REVAMACRLG VEVAIVVGSR NLFCGGTWIT  360
ATVNAEAMVK GTNVEGVYDC HSQDSNATFE HITFHDLASR GLTTMDTMAL NFCEENSIPV  420
VVFNFLEAGN ITKALCGEQV ANRRAMQTVS VDETKNTVVL RAEHRDEEGR KVADKLELKT  480
RNPETIKQVE KKLMDKGVQR MERHPADGIP LKRQPKSGHG GKYTWEGPDR VEDYEMQPDP  540
PAMDEGDPNY DEEQTKKDTA GGGDDVAVEV VKGEVEVAKE APTGVARVEV DPRLISSA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485504.10.0PREDICTED: uncharacterized protein LOC108856238
TrEMBLA0A0D3CLJ40.0A0A0D3CLJ4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FGQ40.0A0A3P6FGQ4_BRAOL; Uncharacterized protein
STRINGBo5g137800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.20.0Trihelix family protein