PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4410_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WOX

Protein Properties

Length: 273aa MW: 30274.2 Da PI: 6.6568

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4410_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.3	3.6e-15	28	88	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ RrC4410_p2 28 RTRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 88 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.7	1.4e-34	27	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +rtRW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q RrC4410_p2 27 VRTRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 90 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-8	6	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-13	23	94	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.208	24	89	IPR001356	Homeobox domain
SMART	SM00389	3.2E-5	26	93	IPR001356	Homeobox domain
Pfam	PF00046	9.5E-13	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDQEGSSQSP TGHGRSSSAT SNSTEPVRTR WSPKPEQILI LESIFNSGIV NPPKDETVRI 60 RKMLEKFGAV GDANVFYWFQ NRRSRSRRRQ RQLQAANAAA VASRGAEDHP HMTTMNMHHP 120 YSNNETDLGF GSCSNLSANY HFNEPSSQVS SFLLGLSPSS LNGGCESNNG MSDLITMYGH 180 ESDHNHHFHH HQHSSNDASN SSQSDQTSNF YYRQGLMTVF INGVPTEVTN GAIDMKAVFG 240 EDLVLLHSSG LPLPTDEFGF LMHSLQHGQS YFL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189450	1e-167	AC189450.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB071M18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443286.1	1e-165	PREDICTED: WUSCHEL-related homeobox 12
Swissprot	Q8GY25	1e-118	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	M4E4D5	1e-142	M4E4D5_BRARP; Uncharacterized protein
STRING	Bra023638.1-P	1e-143	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	4e-91	WUSCHEL related homeobox 12

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]