PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC43_p17
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 327aa    MW: 34656.6 Da    PI: 6.6504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC43_p17genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11153198555
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  RrC43_p17 153 HSIAERLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 198
                99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-17146207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-13146202No hitNo description
PROSITE profilePS5088817.301148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-16150207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-9153198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MNSSLLTPSS SSSSPHHLQS PATFDHDDFL QNFFSSAPWP SSVLEDDSPP PTSETAVASF  60
HHHDVDSRNQ ITMIPLSHHN PNDAVDVNAL YSGFSAGSLP FHFPQGSGGG VMKQSHTPTQ  120
SQATASTTTG GTATTPQTKP KVRARRGQAT DPHSIAERLR RERIAERMKS LQELVPNGNK  180
TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GAASVSSQIS EDAGGSQENT SGENQTAAKM  240
TEHQVAKLME EDMGSAMQYL QGKGLCLMPI SLATTISTAT CPSRNPLISA VKEAGSLLSP  300
NTATTAVVDV KGASVVTVKD ASSVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937111e-178AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462876.10.0PREDICTED: transcription factor bHLH69, partial
SwissprotQ8S3D51e-168BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A0D3A2Z90.0A0A0D3A2Z9_BRAOL; Uncharacterized protein
STRINGBo1g011740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-146LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]