PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC438_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 206aa    MW: 23481.6 Da    PI: 5.3574
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC438_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07550347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT eE e++++av+ +      ++++Ia+ +g  ++  ++ +++qk 
        RrC438_p2  5 SWTNEENEQFKNAVQVFSVFspnRFERIAQFLG--KSVVDVMEHYQKM 50
                     7**************986445557********8..9**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.348152IPR017884SANT domain
SMARTSM007171.7E-6253IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-11458IPR009057Homeodomain-like
CDDcd001674.22E-6551No hitNo description
Gene3DG3DSA:1.10.10.606.3E-4552IPR009057Homeodomain-like
PROSITE profilePS512937.43579130IPR017884SANT domain
SMARTSM007170.1180128IPR001005SANT/Myb domain
SuperFamilySSF466895.83E-781130IPR009057Homeodomain-like
CDDcd001677.42E-584126No hitNo description
Gene3DG3DSA:1.10.10.608.2E-484126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAANSWTNEE NEQFKNAVQV FSVFSPNRFE RIAQFLGKSV VDVMEHYQKM VDDLLEIGSS  60
QIALSNGLFD AAVPSWCRME KLIWNKEEHE WFLIGLRRFG KKCDKIAVLV VTKTAMQVAI  120
YARNFFTWQN PRNNVMKRRR TMDITMGDTS VDSSSPQKRI RGDINMDSTG QQESLVPLQP  180
QPQQGPVALE TGQDANISDS ESDNFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730892.11e-109transcription factor DIVARICATA-like
TrEMBLA0A398ATA41e-106A0A398ATA4_BRACM; Uncharacterized protein
STRINGBra034131.1-P6e-96(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15934911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-24MYB family protein