PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC43820_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 93aa MW: 10756.8 Da PI: 10.4114 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa a+++a++k++g RrC43820_p1 35 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALKFKG 84 69*******.**********93....36************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-23 | 35 | 92 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-34 | 35 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-34 | 35 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.948 | 35 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-15 | 35 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.84E-21 | 35 | 93 | No hit | No description |
PRINTS | PR00367 | 4.1E-12 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-12 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MFLLLKIKVY IVYISIYMRL IICVLVVEGN LRKIHYRGVR QRPWGKWAAE IRDPQKAARV 60 WLGTFETAEA AALAYDEAAL KFKGSKAKLN FPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-27 | 35 | 92 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-27 | 35 | 92 | 5 | 63 | ATERF1 |
3gcc_A | 2e-27 | 35 | 92 | 5 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189195 | 2e-78 | AC189195.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004B12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018475288.1 | 1e-41 | PREDICTED: ethylene-responsive transcription factor ERF115-like | ||||
Swissprot | Q9FH54 | 2e-39 | EF114_ARATH; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A397ZYZ2 | 7e-40 | A0A397ZYZ2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CNZ4 | 7e-40 | M4CNZ4_BRARP; Uncharacterized protein | ||||
STRING | Bra005932.1-P | 1e-40 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 2e-30 | ERF family protein |
Publications ? help Back to Top | |||
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