PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4360_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21662.8 Da    PI: 4.6441
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4360_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.73.5e-091272046
                HHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl 46
                +lKKA EL vLCd e++v+ +  +g+l
  RrC4360_p1  1 MLKKALELTVLCDNEICVLHYDRDGNL 27
                59********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003195.3E-5127IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.587134IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-7137IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MLKKALELTV LCDNEICVLH YDRDGNLVNT MPEDQSQVTA FSTISYVKRQ GRDLRYSQDH  60
HHQTVQDQSP FLDVTPQENH NFPEASSYGF FPANAFSSSL IEEENPLMMN FIPHDLDQQE  120
SFTNLLMSGD HVSTITDQYL PSPAPSATLC SSNHHQSKFS VFVFNHETAT FTQLPNSASS  180
SFGQGFTGTL TSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476964.11e-102PREDICTED: agamous-like MADS-box protein AGL93
RefseqXP_018487989.11e-102PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLA0A0D3CP912e-63A0A0D3CP91_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G4R62e-63A0A3P6G4R6_BRAOL; Uncharacterized protein
STRINGBo6g015480.14e-64(Brassica oleracea)
STRINGBo6g015500.14e-64(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27944.13e-18M-type_MADS family protein