PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4340_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 193aa MW: 21845.4 Da PI: 7.0007 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.8 | 7.8e-11 | 99 | 135 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 rg W + Ed +l+++v+ +G+ +W++Ia++++ gR+++ RrC4340_p3 99 RGHWRPAEDAKLKELVAVYGPQNWNLIAEKLQ-GRSGY 135 899*****************************.***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.34E-9 | 91 | 134 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-12 | 91 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.015 | 94 | 144 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.9E-9 | 99 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.79E-8 | 102 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MGMEIAHTNV SSPSITPHFP SSSHPLTNNI VMSKDHHRWM DQIASWQYFS LNNDKGHYYA 60 SQGEEDMKNP NRCNCSNSSK KERGDCGSCR NSLKASVSRG HWRPAEDAKL KELVAVYGPQ 120 NWNLIAEKLQ GRSGYGHGMF ENQMMVDDYS SRTREAATKF DLLSQTGKCE MLDESMSEKK 180 EPHFFDFLGL GTV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189353 | 1e-119 | AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455346.1 | 5e-96 | PREDICTED: transcription repressor MYB6-like | ||||
Refseq | XP_018455371.1 | 5e-96 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q9SEZ4 | 4e-41 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | M4CJL0 | 2e-74 | M4CJL0_BRARP; Uncharacterized protein | ||||
STRING | Bra004394.1-P | 3e-75 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-43 | myb domain protein 105 |
Publications ? help Back to Top | |||
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