PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4308_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 243aa MW: 26559 Da PI: 8.4071 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.8 | 1.1e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+ RrC4308_p1 2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISAVPEANRPALFQSLLFEACGRTVNPVNGAVGMLWTGNWHVCQAAVET 100 6*********************9999777889****************************************************************998 PP DUF260 95 all 97 +l+ RrC4308_p1 101 VLR 103 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.401 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.0E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISAVPEANR 60 PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPM SDLLESPSLN 120 SSDESTEIWR MQRPGGSRND ENGRNHHYSR SKLTTTGMKE SPVNRKRSKT ERSDLELNHG 180 LALTGPVDPA PFLPPPPFGK AVNSDHPGSP SEESVTTSCY ENGFSGSDGY KNKKEKKLLN 240 LFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473874 | 1e-127 | AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds. | |||
GenBank | AY072144 | 1e-127 | AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. | |||
GenBank | AY122976 | 1e-127 | AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018458854.1 | 0.0 | PREDICTED: LOB domain-containing protein 39 | ||||
Swissprot | Q9SZE8 | 1e-123 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A291LR20 | 1e-136 | A0A291LR20_BRARR; Transcription factor LBD39 | ||||
TrEMBL | A0A398APD1 | 1e-136 | A0A398APD1_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D5L5 | 1e-136 | M4D5L5_BRARP; Uncharacterized protein | ||||
STRING | Bra011772.1-P | 1e-137 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-111 | LOB domain-containing protein 39 |