PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC42715_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20397.3 Da    PI: 10.1391
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC42715_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.93.9e-1137681546
                 HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkl 46
                  R +++lKKA EL vLCd e++v+ +  +g+l
  RrC42715_p1 37 AREKTMLKKALELTVLCDNEICVLHYDREGNL 68
                 599***********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00151474IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.8951675IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-112497IPR002100Transcription factor, MADS-box
PfamPF003192.8E-63868IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MVSPSSPSSS DSSKKMKKNK LSVARNKTRF KKPFLLAREK TMLKKALELT VLCDNEICVL  60
HYDREGNLVN TMPEDQSQVT GILDKYRNLS DGEKLKKSTN LSQFYNKKLV DEKKRSLTDA  120
EERKKFTKKV GDFKGSLLDQ FRILEDRVRD LRCSKDHHHQ TQQDQSPFLD VTSQEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438138.11e-107PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLM4DQH42e-76M4DQH4_BRARP; Uncharacterized protein
STRINGBra018767.1-P4e-77(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26880.12e-25AGAMOUS-like 26