PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4255_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TCP | ||||||||
Protein Properties | Length: 464aa MW: 49974.1 Da PI: 7.0672 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 134.3 | 1.1e-41 | 97 | 276 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s + RrC4255_p1 97 PLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSLPshyrnaastfs 195 57999***********************************************************88888777655566666653333344455566666 PP TCP 89 .................................kaaksaa.kskksqksaasalnlakesrakararare.rtrekmrikn 134 +a +s+ ++ ++ ++++s+ln+++ ++++ +++++e ++ +k r+++ RrC4255_p1 196 pnnifspsllqqqqqrsggggggflhphhhlqgRATTSSLfPGIDNFNPTTSFLNFHNPTKQEGDQDSEElSSDKKRRLQT 276 66666666677777777788999999999999988888888*************************999977777766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-40 | 102 | 280 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.505 | 103 | 157 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MDGGDNVGGG DDHNRHLHHH HHRPTFPFQL LGKRDPDDNN QQQQQQQPSP SSSSSLFSLH 60 QHQQLSQTQP QLQPQQKPEP QKDLQEETTV VVAKKPPLKR ASTKDRHTKV DGRGRRIRMP 120 ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPSVIAATGT GTIPANFTSL NISLRSSGSS 180 MSLPSHYRNA ASTFSPNNIF SPSLLQQQQQ RSGGGGGGFL HPHHHLQGRA TTSSLFPGID 240 NFNPTTSFLN FHNPTKQEGD QDSEELSSDK KRRLQTASDI HHQHEQIGGY TLQSSNSGST 300 ATTAQIPGNF WMVAAAAAAA GGGNNNQTGG GSVGSGGGGE PVWTFPSINT AAAALYRSSV 360 SGVSGGAVSS GLHFMNFAAP MAFLTGQQLA TSSNHEINED NNNNEGGRRS DGGDHHSTHE 420 RHHHHHHQQQ HHNILSGLNQ YGRQVSGESQ ASDSLGGGEE DPQD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00396 | DAP | Transfer from AT3G47620 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353301 | 0.0 | AK353301.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-G20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018441754.1 | 0.0 | PREDICTED: transcription factor TCP14 | ||||
Swissprot | Q93Z00 | 0.0 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A3N6RME3 | 0.0 | A0A3N6RME3_BRACR; Uncharacterized protein | ||||
STRING | Bra018126.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3915 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 1e-137 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
Publications ? help Back to Top | |||
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