PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC422_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 327aa MW: 37222.1 Da PI: 8.2006

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC422_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.9	1.6e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd++k+ePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++lv RrC422_p5 16 LPPGFRFHPTDEELISHYLHKKVLDISFSA-KAIGEVDLNKSEPWELPWMAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKSLV 113 79************************99.88***********8888899***********************************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy+grapkg+kt+Wvmheyrle RrC422_p5 114 GMKKTLVFYRGRAPKGQKTNWVMHEYRLE 142 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-65	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	60.161	16	166	IPR003441	NAC domain
Pfam	PF02365	8.2E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
METFCGFQKE EEQMDLPPGF RFHPTDEELI SHYLHKKVLD ISFSAKAIGE VDLNKSEPWE 60 LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYRGRAPKGQ KTNWVMHEYR LEGKLSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR 180 IGTLGTDFSP SLMPSLTDAS PFNDKTKTEP VYVPCFSNQT DQAQGNTLNC FSSPDIFHRI 240 PLYQTQSLQV SGNLQSPILG QEHSVLNAMI DNNRRQNLKV MSVSQETAVS TDINTDISSD 300 FEYGKRHAQE DPSSSAGPVD LEPFWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	5e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	5e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	5e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	5e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	5e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	5e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	5e-55	13	172	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC966745	0.0	KC966745.1 Brassica napus NAC transcription factor 100 (NAC100.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018460655.1	0.0	PREDICTED: NAC domain-containing protein 100
Refseq	XP_018480954.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	0.0	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0D3DDL1	0.0	A0A0D3DDL1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6ETE3	0.0	A0A3P6ETE3_BRAOL; Uncharacterized protein
STRING	Bo7g098620.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	0.0	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]