PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4211_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 257aa MW: 27888.9 Da PI: 9.0071

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4211_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.1e-39	52	109	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCyynnyslsqPryfCk+C+ryWtkGG+lrn+PvGgg+rknk+s+ RrC4211_p3 52 SLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCKRYWTKGGTLRNIPVGGGCRKNKRST 109 689****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	46	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.301	53	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.3E-34	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MDHLLHQQDV FGNFNKTREA MGSSSNPPHL DHEQKKPSPA TGAARPQPPE LSLRCPRCDS 60 TNTKFCYYNN YSLSQPRYFC KSCKRYWTKG GTLRNIPVGG GCRKNKRSTS SATRSLRTTP 120 EPASHDGKAF SAASFGGFGN NEHIDLSLAF ALLNKQPPGS SSQLGFPSEF GSSSHQSGME 180 SVFGTSQQKG NTGYAFGNGS SGLDMTMSDP NKVLWGFPWQ MNGEMNMGGG GGGHVDHIDS 240 GREIWTNMNY INSGALM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:30626969}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269\|PubMed:20220754, ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC234737	0.0	AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018453801.1	1e-176	PREDICTED: dof zinc finger protein DOF5.3-like
Swissprot	Q84TE9	1e-148	DOF53_ARATH; Dof zinc finger protein DOF5.3
TrEMBL	A0A078F757	1e-171	A0A078F757_BRANA; BnaA02g06470D protein
TrEMBL	A0A3P5ZYW9	1e-171	A0A3P5ZYW9_BRACM; Uncharacterized protein
STRING	Bo2g025060.1	1e-170	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6132	18	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-136	TARGET OF MONOPTEROS 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]