PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4174_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 373aa    MW: 42246.4 Da    PI: 4.6168
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4174_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.44.6e-33161092102
                   HHHHHHHHHCTGGGTTTSEESSSS..SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkeliswseng..nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                   Fl+k ye+++d++++++isws+ng  nsfv++d++ f+ ++LpkyFkhsn++SFvRQLn+YgF+kv+ ++          eF++++F +g+k+ll++
    RrC4174_p1  16 FLRKCYEMVDDSSTDSIISWSDNGddNSFVISDTTLFSAQLLPKYFKHSNLSSFVRQLNIYGFRKVDADH---------YEFANDWFVRGRKDLLKN 103
                   9********************998789*****************************************99.........78**************** PP

                   XXXXXX CS
  HSF_DNA-bind  97 ikrkks 102
                   + r+k+
    RrC4174_p1 104 VIRRKN 109
                   999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-339102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-3111107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5112107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.2E-2816107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-195668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVKSSEGVSS SSVAPFLRKC YEMVDDSSTD SIISWSDNGD DNSFVISDTT LFSAQLLPKY  60
FKHSNLSSFV RQLNIYGFRK VDADHYEFAN DWFVRGRKDL LKNVIRRKNV QSSSSDHQSK  120
SVSKKQESAS ETCQEVYPEL WKEVGILKGD KKALAQELVK VRQYQEVTDT KMLHLEDRVQ  180
GMEESQQEML SFLVMVMQNP SLLVQLLQPK ENNWRKGEGG GGGATILEEV TEEGESNSNG  240
LPLVTYQQRP SEGTAKSSSS DMNDFLRNAD MLKFCLDENH VPLIIPDLYD DGAWEKLLLL  300
SPSKKKNVKK GKDDETMQEE EGEPMELDKS GTLKRIQEEM ERADEFDSGQ LTPERSRILE  360
ILAQQIGLMA SNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23810721129Heat shock factor protein 1
5d5v_B2e-23810721129Heat shock factor protein 1
5d5v_D2e-23810721129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324491e-149AC232449.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463419.10.0PREDICTED: heat stress transcription factor A-8-like
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A078H6Z90.0A0A078H6Z9_BRANA; BnaC02g17710D protein
STRINGBo2g056350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-155heat shock transcription factor A8