PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4162_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 310aa    MW: 35882.3 Da    PI: 8.9401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4162_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.62.1e-48251532128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                  pGfrFhPtdeelv +yL kkv  kk  +++e+i+++diy+++PwdLp + +++eke yfF+kr +ky++++r+nr+t sg+Wkatg dk+++    ++
  RrC4162_p1  25 LPGFRFHPTDEELVGFYLSKKVLLKKsSKIDEIISQIDIYQFDPWDLP-RSRHTEKESYFFCKRGRKYRNSTRPNRVTGSGFWKATGIDKPIYPDgtSN 122
                 59*******************887774778888***************.5566789*************************************986667 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +++glkktLv+y g+a kg+ktdW+mhe+rl
  RrC4162_p1 123 AVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 153
                 77***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-4921188IPR003441NAC domain
PROSITE profilePS5100550.49224188IPR003441NAC domain
PfamPF023652.3E-2426153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEEMMGTWAK RREEQEVQEE QVLKLPGFRF HPTDEELVGF YLSKKVLLKK SSKIDEIISQ  60
IDIYQFDPWD LPRSRHTEKE SYFFCKRGRK YRNSTRPNRV TGSGFWKATG IDKPIYPDGT  120
SNAVIGLKKT LVYYLGSAGK GSKTDWMMHE FRLPTANDTI PGGSNHRSPT PSSLLHAEVW  180
TLCRIFKRNV SGKKYTPDWK ELASGERVKP KQSKYQEAAY ISFGDNESRT NKTNVMESKE  240
NNEKNVFQLH QTPHQHQPIP MEYTSSTKVD NTVPHFSNDN MDDTNYVNWD ELQSVVEFAF  300
GPSNRCPHIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-44121884168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266455e-88AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBankCP0026865e-88CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490238.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK553e-71NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A397ZDY80.0A0A397ZDY8_BRACM; Uncharacterized protein
STRINGBra034719.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-150NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]