PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC411_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 434aa    MW: 49300.1 Da    PI: 10.2405
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC411_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.45.6e-073023381753
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                A+rsR RK+++i eLe+ v++L+ae ++    l+ l+
  RrC411_p7 302 AQRSRVRKLQYISELERTVQALQAEGSKVSADLDFLN 338
                89***********************988777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.4E-6286361No hitNo description
SMARTSM003380.007289350IPR004827Basic-leucine zipper domain
CDDcd147032.18E-14294341No hitNo description
SuperFamilySSF579592.7E-5302344No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MKGKGPKIKG PKGKKRAEAT EFLYRFQHPH NDLLLLFLYG PTPSFSTSSI RIHFLNPRFL  60
RLRAMASSKG TQSVKDLMHP GKNALLPPKI PFPTVSAPYS EYIPLGSRHG HKLNDEKPHH  120
HHHHHQRTSS ESDLVEEPPS WLDDLLNEPE SPVRKCGHRR SSSDSYAYLD MANAKNISLT  180
LQNDFSYRNT GSPSQRGVHE LDWSRNTQDA AFYADSNFLN RQRDSLVASG PRPSWQPFTR  240
DSVGGKHMGA SSYMPQEAPE TKNYAKTLSH DPKKFSPELK NSNTQPGTSD ADNTRRAKQQ  300
FAQRSRVRKL QYISELERTV QALQAEGSKV SADLDFLNQR NLILSMENKA LKQRLESIAQ  360
EKLIKQMEQE LLEKEIGRLR ALYQQQQQQT QQPSATHKRA SSKDLDSQFS SLSLNSKDSN  420
SSRDSVSVTS QFHF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451979.10.0PREDICTED: uncharacterized protein At4g06598-like
TrEMBLA0A078GVJ80.0A0A078GVJ8_BRANA; BnaC09g15590D protein
TrEMBLA0A397Y2680.0A0A397Y268_BRACM; Uncharacterized protein
TrEMBLA0A3P6EBH70.0A0A3P6EBH7_BRAOL; Uncharacterized protein
STRINGBo9g052080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33602444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-166bZIP family protein