PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4110_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 304aa    MW: 34550.2 Da    PI: 6.7865
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4110_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.64.1e-39210132129
         NAM  32 evikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                 evi+evd++k+ePwdL++++k     ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfykgrap+g+ktdW+mheyr
  RrC4110_p2   2 EVIREVDLNKLEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRN-SYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYR 99 
                 589*************964444222455*************************************9.8999**************************** PP

         NAM 128 le 129
                 le
  RrC4110_p2 100 LE 101
                 85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.0631123IPR003441NAC domain
SuperFamilySSF1019411.28E-442123IPR003441NAC domain
PfamPF023653.0E-1626100IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEVIREVDLN KLEPWDLQER CKIGSTPQNE WYFFSHKDRK YPTGSRTNRA THAGFWKATG  60
RDKCIRNSYK KIGMRKTLVF YKGRAPHGQK TDWIMHEYRL EDADDPEGNP SEDGWVVCRV  120
FMKKNLFKVV NDGGSSINSA DQYNHDASNN NNKLQARSFM HGDSPYQLVR NHGATTFELN  180
KPDLALHQYP PIFHKPPSLG FDYSSGLQRD CESAASEGLQ YQQACEQGLE VGTCETGANH  240
NHQQGLGEWS MMDRLVTCHV GNEDSSRGIR FEDGNNNSSA VVQPVSTSNQ LSLPSEMDFW  300
GYSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-39112546167NO APICAL MERISTEM PROTEIN
1ut4_B3e-39112546167NO APICAL MERISTEM PROTEIN
1ut7_A3e-39112546167NO APICAL MERISTEM PROTEIN
1ut7_B3e-39112546167NO APICAL MERISTEM PROTEIN
4dul_A3e-39112546167NAC domain-containing protein 19
4dul_B3e-39112546167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1336810.0AY133681.1 Arabidopsis thaliana clone C103095 putative NAM/NAP (At4g10350) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456850.10.0PREDICTED: protein BEARSKIN2-like
RefseqXP_018456855.10.0PREDICTED: protein BEARSKIN2-like
SwissprotQ9SV870.0BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A397ZYP70.0A0A397ZYP7_BRACM; Uncharacterized protein
STRINGBra000709.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52132648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.10.0NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]