PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4027_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 402aa MW: 45611.7 Da PI: 5.3968

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4027_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.5	1.2e-25	74	155	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W + e+++Li++rre+++ ++++k++k+lWee+s+kmrergf rsp +C++kw+nl k++kk + +k+++ ++ +++++++e RrC4027_p3 74 WVQGETRTLITLRRETDTLFNTSKSNKHLWEEISSKMRERGFDRSPAMCTDKWRNLLKEFKKAGNDDKGGSGGK---MSHYKEIE 155 ******************************************************************99985444...67788776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.165	66	130	IPR017877	Myb-like domain
SMART	SM00717	0.0011	70	132	IPR001005	SANT/Myb domain
CDD	cd12203	1.35E-26	72	136	No hit	No description
Pfam	PF13837	5.8E-20	73	156	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MFTSSDKPPS PIDFYKDDND NESPTSRDIE MMIDGDLQPP PHQILLGDNN NSSSSSEDHD 60 ITTTKAPKKR AETWVQGETR TLITLRRETD TLFNTSKSNK HLWEEISSKM RERGFDRSPA 120 MCTDKWRNLL KEFKKAGNDD KGGSGGKMSH YKEIEDILRE RSKKVAVATT SYKSVTTPSK 180 VDSFLQFPDK GFDDAGMSFA SAEGNGRPTL NLERELDHDG HPLAIASADA VTANGVPPPW 240 NWREPTAGNG KRSDGQQPFV GKIITVKYGD YTRRVGIDGT AEAIKEAIRS AFRLRTRRVF 300 WLEDEEQVVR SLDRDMPLGN YTLHVDEGIA VRVCHYDESD PLPVHQEEKV FYTEEDYREF 360 LGRRGWTCLR EFDGGFRNID GMVRNVDSMD DLQPGVLYRG MR

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MFTSSDKPPS PIDFYKDDND NESPTSRDIE MMIDGDLQPP PHQILLGDNN NSSSSSEDHD  60
ITTTKAPKKR AETWVQGETR TLITLRRETD TLFNTSKSNK HLWEEISSKM RERGFDRSPA  120
MCTDKWRNLL KEFKKAGNDD KGGSGGKMSH YKEIEDILRE RSKKVAVATT SYKSVTTPSK  180
VDSFLQFPDK GFDDAGMSFA SAEGNGRPTL NLERELDHDG HPLAIASADA VTANGVPPPW  240
NWREPTAGNG KRSDGQQPFV GKIITVKYGD YTRRVGIDGT AEAIKEAIRS AFRLRTRRVF  300
WLEDEEQVVR SLDRDMPLGN YTLHVDEGIA VRVCHYDESD PLPVHQEEKV FYTEEDYREF  360
LGRRGWTCLR EFDGGFRNID GMVRNVDSMD DLQPGVLYRG MR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-40	68	153	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00380	DAP	Transfer from AT3G25990	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018441514.1	0.0	PREDICTED: trihelix transcription factor GT-4-like
Swissprot	Q9LU92	0.0	TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBL	A0A3P6B628	0.0	A0A3P6B628_BRACM; Uncharacterized protein
STRING	Bra036354.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	0.0	Trihelix family protein