PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4020_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 24905.2 Da PI: 8.3786 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.9 | 2.7e-41 | 45 | 144 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lq+q++ l+ael ++++ RrC4020_p2 45 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQHQVQGLQAELTAVRS 143 7**********************************************************************************************9998 PP DUF260 100 e 100 e RrC4020_p2 144 E 144 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.832 | 44 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.2E-42 | 45 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSRERERFEE IGKKIKREAD TWPHQMAGIR RQMSGPHGTL NTITPCAACK LLRRRCAQEC 60 PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD AANSLVYEAN VRLRDPVYGC 120 MGAISALQHQ VQGLQAELTA VRSEILKYKQ REAVATLMVA SNSQVAGFHN SGGVSVITPQ 180 PQTPSTPPQP TAADHPPPPS SCVFSQPTTR PLEYGDIESE NNSYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 45 | 148 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 45 | 148 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473844 | 0.0 | AB473844.1 Arabidopsis thaliana ASL11 mRNA for ASYMMETRIC LEAVES2-like 11 protein, complete cds. | |||
GenBank | BT025288 | 0.0 | BT025288.1 Arabidopsis thaliana At2g40470 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009141907.1 | 1e-147 | PREDICTED: LOB domain-containing protein 15 isoform X2 | ||||
Swissprot | Q8L5T5 | 1e-129 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A291LQZ7 | 1e-146 | A0A291LQZ7_BRARR; Transcription factor LBD15 | ||||
STRING | A0A087H476 | 1e-145 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-131 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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