PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3978_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 129aa MW: 14837 Da PI: 9.932

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3978_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.5	2.7e-23	11	92	50	128
NAM 50 kvkaeekewyfFskrdkkya....tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+k+++ wyfF++r+ ++ ++k ++r+t sgyWkatg d+++ + kg ++g+kktLv+++g++ +g+ t Wv+he+++ RrC3978_p1 11 KLKSKDLVWYFFCRRECYASnaadKKKGTKRTTPSGYWKATGVDRKIRN-KGVEIGIKKTLVYHEGKSANGVWTPWVIHEFHI 92 56777889****98655533335667889999**********9.9999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.476	1	110	IPR003441	NAC domain
SuperFamily	SSF101941	9.02E-26	12	97	IPR003441	NAC domain
Pfam	PF02365	5.5E-13	19	92	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MSKTRERALS KLKSKDLVWY FFCRRECYAS NAADKKKGTK RTTPSGYWKA TGVDRKIRNK 60 GVEIGIKKTL VYHEGKSANG VWTPWVIHEF HITSLPPAQL NWSYVPYFLD LLDVDMGFDS 120 SVSDLVDFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-13	19	103	73	151	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-13	19	103	73	151	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-13	19	103	73	151	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-13	19	103	73	151	NO APICAL MERISTEM PROTEIN
3swm_A	3e-13	19	103	76	154	NAC domain-containing protein 19
3swm_B	3e-13	19	103	76	154	NAC domain-containing protein 19
3swm_C	3e-13	19	103	76	154	NAC domain-containing protein 19
3swm_D	3e-13	19	103	76	154	NAC domain-containing protein 19
3swp_A	3e-13	19	103	76	154	NAC domain-containing protein 19
3swp_B	3e-13	19	103	76	154	NAC domain-containing protein 19
3swp_C	3e-13	19	103	76	154	NAC domain-containing protein 19
3swp_D	3e-13	19	103	76	154	NAC domain-containing protein 19
4dul_A	3e-13	19	103	73	151	NAC domain-containing protein 19
4dul_B	3e-13	19	103	73	151	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018457690.1	6e-63	PREDICTED: NAC domain-containing protein 69-like
Swissprot	Q9M126	9e-34	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	A0A397XPX4	6e-49	A0A397XPX4_BRACM; Uncharacterized protein
STRING	Bra036326.1-P	4e-49	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	4e-36	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]