PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3959_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 492aa    MW: 55143.1 Da    PI: 4.427
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3959_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19.2e-36421332102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws n+nsf+v+d+ +fak++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
    RrC3959_p4  42 FLSKTYDMVDDPATDSIVSWSGNNNSFIVWDPPQFAKDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHLLKTIT 129
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    RrC3959_p4 130 RRKP 133
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.7E-3936126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.42E-3637131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-6238131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDPDNRTSTD GGGSVTMEST EIQPTPQPQP VAVLSGNAPP PFLSKTYDMV DDPATDSIVS  60
WSGNNNSFIV WDPPQFAKDL LPKNFKHNNF SSFVRQLNTY GFRKVDPDKW EFANEGFLRG  120
QKHLLKTITR RKPAHGHGHG HQQSQHSIGQ NSSVSSCVEV GKFGLKEEVE RLKRDKNVLM  180
QELVRLRQQQ QSTDNQLQTM VQRLQGMENR QQQLMSFLAK AVQSPHFLSQ FLQQQNQQNE  240
SSRRISDTSK KRRFRRDGIV SNNKESASPD GQIVKYQPPM HEQAKAMFSQ LMNMEPYKTG  300
DDGFLLGNGT STTEGTEMEI SSNNVAGITL QEMPTASEIQ SSSSPSGATP ENVTVAEFPT  360
PDEAIPSPDD PSLPEFADIL PENMAEVPPE NFLETNMEDM STILDSDLFN SDDLPFDFDD  420
ILRDPDLEPS VDDYASLFQD ILMSSPVPED MDVTPVDVRT KDSETEKKQM DNLTQQMGLL  480
SPETIDHSRQ NP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-264013118120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892550.0AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440991.10.0PREDICTED: heat stress transcription factor A-1d
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A0D3CDP80.0A0A0D3CDP8_BRAOL; Uncharacterized protein
STRINGBo5g048950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]