PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC392_p7

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 921aa MW: 103166 Da PI: 6.8572

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC392_p7	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90	1.8e-28	609	659	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+le+l++yF+++++dAA+++gvc+T+LKriCRq+GI RWP+Rkik++ RrC392_p7 609 EKSIDLEVLRQYFAGSLRDAARNIGVCPTTLKRICRQHGITRWPSRKIKKV 659 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.143	598	679	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-24	612	659	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.49E-23	810	905	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.4E-23	816	902	No hit	No description
PROSITE profile	PS51745	27.611	818	903	IPR000270	PB1 domain
SMART	SM00666	5.9E-25	818	903	IPR000270	PB1 domain
Pfam	PF00564	8.8E-18	820	902	IPR000270	PB1 domain
CDD	cd06407	1.22E-38	820	902	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 921 aa Download sequence Send to blast
MEGGGGGDDS FLPKSSFSTF PETAMDMDFM EELLFDGCWL ETTDSKILKH ITGQPSPSSA 60 NMNGNNNSFL YGYQFAQNPS KDHISNEEIV RKFPPVAPGF LKFKDPINQV PLEQSAAMST 120 AQGDKFLLEQ TEGGRRWWIA PRTSQDPSSS VKDRLFQAIK AIQQDKDFLI QIWVPIQQEG 180 KNFLTTLEQP HFFNPKYSSL KRYRDVSVAY NFLADEDSKE SVGLPGRVFL GKLPEWTPDV 240 RFFRSEEYSR IKEAQKCDVR GSLALPVFEI GSGTCLGVLE IVTTTQKMNY KPELENICKA 300 LEAVNLRSSA NLKSPSKEQV YNQFYSAILP EVTDFLTWVC RSHDLPLALT WAPCARQGKD 360 GSRHSDENFS ECVSTIDSAC FVLDENSNHF LEACSEHHLL QGEGIVGKAF KATKLFFVPE 420 VTTFSKTNYP LAHHANISGL HAALAVPLKN KFNGSVEFVL EFFFPKSCLD TEAQQEMLKS 480 LSVTLQQDFR SLNLVIDKEL ELEVVFPVRE ELLFSEKPLI DAETGENLKP LPLEEISQED 540 SSWISHMIKA NEKGKGVSLS WEYQREEPKE EFMLTSGWDN SNLLSDAHQL HKASNSGLRP 600 GEKRRTKTEK SIDLEVLRQY FAGSLRDAAR NIGVCPTTLK RICRQHGITR WPSRKIKKVG 660 HSLKKLQVVI DSVQGAQGSI QLDSFYTSFP ELSSPNVSAG TSIKNTHQSK HLNVQTENGV 720 SPPSSFCSHS SGSSACCSTG ANQSSINTAN NTITTLMAEN ASAILKRARS EVRLRTMNHE 780 ETKFLPRTMS HKTFSEHHPL LENLPRLPKS HHSKAGGASK VKATFGEAKV RFTLLPTFGY 840 RELQQEIAKR FNIDNNNIAT FRLKYLDDDK EWVLLTCEAD LEECIDIYRS SQSRTIKISV 900 HEASHLRLGG SFGSTGPGPL L

Sequence ? help Back to Top

Protein Sequence Length: 921 aa Download sequence Send to blast

MEGGGGGDDS FLPKSSFSTF PETAMDMDFM EELLFDGCWL ETTDSKILKH ITGQPSPSSA  60
NMNGNNNSFL YGYQFAQNPS KDHISNEEIV RKFPPVAPGF LKFKDPINQV PLEQSAAMST  120
AQGDKFLLEQ TEGGRRWWIA PRTSQDPSSS VKDRLFQAIK AIQQDKDFLI QIWVPIQQEG  180
KNFLTTLEQP HFFNPKYSSL KRYRDVSVAY NFLADEDSKE SVGLPGRVFL GKLPEWTPDV  240
RFFRSEEYSR IKEAQKCDVR GSLALPVFEI GSGTCLGVLE IVTTTQKMNY KPELENICKA  300
LEAVNLRSSA NLKSPSKEQV YNQFYSAILP EVTDFLTWVC RSHDLPLALT WAPCARQGKD  360
GSRHSDENFS ECVSTIDSAC FVLDENSNHF LEACSEHHLL QGEGIVGKAF KATKLFFVPE  420
VTTFSKTNYP LAHHANISGL HAALAVPLKN KFNGSVEFVL EFFFPKSCLD TEAQQEMLKS  480
LSVTLQQDFR SLNLVIDKEL ELEVVFPVRE ELLFSEKPLI DAETGENLKP LPLEEISQED  540
SSWISHMIKA NEKGKGVSLS WEYQREEPKE EFMLTSGWDN SNLLSDAHQL HKASNSGLRP  600
GEKRRTKTEK SIDLEVLRQY FAGSLRDAAR NIGVCPTTLK RICRQHGITR WPSRKIKKVG  660
HSLKKLQVVI DSVQGAQGSI QLDSFYTSFP ELSSPNVSAG TSIKNTHQSK HLNVQTENGV  720
SPPSSFCSHS SGSSACCSTG ANQSSINTAN NTITTLMAEN ASAILKRARS EVRLRTMNHE  780
ETKFLPRTMS HKTFSEHHPL LENLPRLPKS HHSKAGGASK VKATFGEAKV RFTLLPTFGY  840
RELQQEIAKR FNIDNNNIAT FRLKYLDDDK EWVLLTCEAD LEECIDIYRS SQSRTIKISV  900
HEASHLRLGG SFGSTGPGPL L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018450921.1	0.0	PREDICTED: protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	V4MB36	0.0	V4MB36_EUTSA; Uncharacterized protein
STRING	XP_006412126.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein